Basic Information

Gene Symbol
jarid2b
Assembly
GCA_943735985.1
Location
CALSEZ010000196.1:398822-420211[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.8e-21 1.8e-17 63.8 0.0 6 89 986 1066 983 1066 0.93

Sequence Information

Coding Sequence
ATGCCGTTGAAGTTGTTACATTTCGATCTGAGGCCCGTCGTCCATTTAACAACCAATACCGTATTCGTCGAGTACGTGATGGAGCGTCGATTAGACCTCATCCAGTCTTGGGTAGCGAGTAGAGGTACGGGATCAACAATGTATAGAACCAGACCGGGTTCTACGCCCACGGTAGCAACAGATGGAAATGTTGAACGTGTTGTGGCTTCCGTGACTGAAAGTCCCCGCTTATCATTCCGTGCACATTCGTCGATATTGAGAATTCCAAAATGGACATTGCAGGTTACTATGCGAAAAAAAACAATTGTTCAAGAACTGCACGACCCCGACCCCGCGGAAACAATCTTGTCGAGGAAGAGTGGCCGTAAAGTACAAGCACAGCGCAAGTTTGCGCAAGGCGCGTACGTGCCTCCCACATCTAGCAATGCTCTCGATCGGGCATCTCGCGTCTCTGACGCGACCAACCAAGACCTTCATGTACACCACAGCAATATGAGTACACCAAACCTACTCGACGTTGTTACATTTCGCAAAATCCATCCACACGCCGCCAATCCTGTCGTGTGTCTTAACCGAATAGATGTACAAAAGAAAAATGATGACAATAGCAATGATAATACTTTAAATCACACGGGTGGACAAAATCCAATTTTTATTACTACTACACATTCAATAGCTCCAGAGAGACAATATTCAGCAATTGAGACGACAAAGGAAGAATCAGAAATAAACTGTTCATCACATAGTTTAGCTTTACCAATATCAATGCGGAAAAGAAAGTCAAATGAAATTGATAATAATACTTCACCAACAAAGAAACCGAGACCAGAAACGTTTAGAATCTCTGGTTCGCGCACAACTGATATCAATGATTCGGTCACTAACGACGACACGGACGACGACCGTCCGTTGAAATATTATATGAAGAAACGCAAGATAGTAGGCGTAAAGAAGACCCAATCAAGACCCAACAGACTCATTAGATCAAAGATCATTACTCGGAGCTCCAAATATGTGTTCGGATTACCTGAGACTGTGGCGATTATGAAAAAAATTAGAAGAAGAATCCCAGTACCGTCTATTGACCTAAATACTGTACGGAAAGCCAAGAAATCAGATGTGGTTCAATCTCCACCAGTGGGGGCAAACAATATCGATACTGCTAGTCCACCAACAACATCGAAAGATTTAGTAGCGAAAGCGGTTGTCACCGCTTCTATGCCAGAAACTACATCTTCTACGTCACAAGGTACGGTAGTACCTTGTCCAAGTACATTTGAAGAGGAGCCACAGGCTTTACTGGAGCCCCAAAATACACAAGAGGCACCTCTGCCGGCTCAGCCTACATCGAACGTACCTTCACCATTTGTGAATATAACAGCATTACCTTCAAAAGTGCAAGATGGTAAACAACGGAAAACTGATGTCACACAACTTAATATATTGCAACGGCGAGATCGACGACTACAAAACTTTGACAAGTATGATATACGAAACTGGTTAAGTACCATGATGCCAGAAGGAGAACAAACCAAAAAGTTTCAGTCTCCGAAGACACCCAAACGAAGAATGATTCTAAGACATGTCGATGGACAGAATTTGACACGTCCAGTGGAAACTACGAACCCAAATGTATATGATTTTGACAGTGATGACTATGACGCAGTGCCGAGTCCTAGCTTATCAGGCTTTAGGCAGGCTACAAGGGCCTTCACTGAAAACACCGGACAGCATAAGTCGTCACGTATTCTTTATTTGGACCCTAGACTGTCAAGTATTCCAAATCACGTTATTCAAATAGGGATGCCAGAGAAAAAAGAATGGATGGCGCGGCTTGTGCCGTTATCCGAGGTTAATCAAAGTAACATATCTATGATCCAAGACGACTCATTGTTCGATCATATGAATAGTGCCAGTGGCGATGCGCAAAAGACACTGGACGATATGCGCAATCGACCGTCAACAAGTGGCCATACTTCTCTTCAAAGTACAAAACCATATGGAAATGTATCAAAAGCCAAGGACACAATTGATCAAACACATATCAGCTTTTCTCAACTACATCGGGGTTTGAAAAATAATTCAAAAGTAAATAAACCATCTAACAACGGTGATAACGGATCACAAACATCCGTAAACATTACCATAAAAGAAGAACAAATTGTAATAAGTGATGATGAAGACGTACAGAACGTTGTACCGGGGACTGGGACACCCGGTCTAAGCTTAACTACAACTTTACGTGAGTCTTCATTGTCGGAACAATTCTCACAAGCACTGAGTAAGAAAACTGATAGTGAAATTGACATGCAACCCGCACCCGTGTCTCAGTCTTTGGCGCGAGTCTCCGAACAAACAAGGAAATCGGAGAACGTCAAGTTCTATTTGGATCCCACTTTCACGTCCAGCCACAAGAGCCAAATAATTGAAATTACCAGCATTGGAGAGCATCTGCACGCGCGGCTTGTGCCCGCGACTCAAATAGACAATAGTATTCCAATGATAAATTACCTGGCATCGTATGACCAGATGATTAGCAACGATGTGGTTAATAGAAAAGTGCAAGACGAGACAACGCCGGACCGATCGCAAGAAGACCCACAGATTTCAAATTCTCCGCCATCGAGCACTCTTTCAACGTCGATGACTTCAACGTCATCACGTAAGAGGTCAAACTCACAAAGAAGCGCTTGTAGGCAAACAATTAATTCAAAAACACCTACAAAAGCGAAAATAGTCGAGGCACCTGTATTTTATCCGACTAAAGATGAATTTAAGGACCCCATAGCCTACATTGAAATGATGAAGCCGATGCTAAAGAAGTTCGGTCTCGGCAAGGTGGTAACACCCCCAGGGTTCTCGCCGTCTTGCATATTAGACGATCAGATGAGATTCTCCGTCGTCAACCAATATATAGCAAGAATGTATTCGCGATGGGGACACGTATCGAGAGAAATGTGCACGATAAGAGCACATTTAGCCACACAGGGTGTTGTTTTTACTAGGGCTCCATTGCTTGATGGTATTGAGGTTAATCTTTCGAAGCTGTACCACGTGGTGCAGCGCCACGGTGGACTCAAAGATGTGATCCAGAAGAAGAGGTGGAGCAAAGTGGCCGAGGAAATGGGTCTACCGAAAGGCCCCAAGCTGGAAAAGAAACTTGACCAAATATATCTTAAGTATTTGGTCCCATACGATACACTATCCAGCAAGGAACGCCAACAAAGAATGGCTACAGTCGAGCAGTTATGGAATAATAAGTACAGACGTATGCTTGACCGCGCTATAAACCCATTGCATCGCCAAAGGCGTCTTCTTGGTGAATCGGAATCTTCGGACGAAGAAAATGATGATGAAGTAACTGGCTTTGAAGGAGCATTAAAAGAAGCCGAAGATTGTGTTGTGCAGGGGCGCAACATGAATTTAGCCTCATTCAAGAAAATAGCTGAAAAAATGATACGCATGCGTTGGCCAAACTCGACGCCATCCACGGAGCGGATAGAGGCGGAGTATTGGAACGTAATGCAAATGGGTTCGGACCACCAGTGTGTTTATTCAGCATCTGTAGATACTAAGCATGGATATGGGTTCCTAAACAGCGACCTATATCCTGATGGAAAACATCCTTGGAATTTAAAGATGCTGAGTAAAAACAAAGGCAATGTCCTGCGTTTCCTGAACTCAGTTCCCGGAGTGTCCACACTGCATTTGGGCATGATGCACTCTACAAGTTGCTTACATCGCGATCCACATGGATTGCCCTTTACAGAGTACCTACACGAGGGGTCGCCGAAGATATGGTACGGAATTCCCGAAGACCAAAGCGAAAACTTCCGCAAAGCGGTAGAGACTCTCTGCCCATCGTATTGCCAGAACAAGGAAGTATGGCTTCCTTCAGACATAGCCATGATACCTCCGAACCAGCTGATAGAGCGGAATGTGGCTCTAACTAGAGTAGAGCAAAATCCGGGAGAGTTCATTTTGGTGTATCCACAAGCCTACTCTTGCTCTATCTGCACTGGATACACGGTATCAGAAAGTGCATACTTTGCTACCAAACATTGGCTGGACAACGCTTATCCTATCTTCCAGAACCTACGCGAGAGTTGCGAGCCGACGATGTTCCCGTTGGAGCAGCTACTTCTGTCCGCGGGAAAGGACCCTTCTATAAGCAGCGCGTTACTTCAACGCGTATACGCACCACTATGCACCATCGTATGGGAAGAACTCGGACAACGGCGCGCCTTAGAATCCCTAGGAATCCCTAGCCAAAGACACATAGAGAGGCCAGGAGACAAACGTCGGCCACCCTCTCCAAGATCAAAACTGAAGCTCAAAGCTCAGCAAAGCGACGAATGCGAGATTTGTCGCGCGACGTTATACCTCTCACATGTGACGGGTATAACCGACGTGATGTCACCAATGTGCATTCAGCATGCATTACGTGTGCTCCATTCGCCTAAGTTCAAAGGACGCAGTCTAACCTCAATAGATCTTACCTGCTTCTACTCCGCCGCGGAGCTCGAGACCCTGTTACAAAACGTCGAGAGGAGGCTAGCCACCAGCAACTCGTGTTCAGTCCACCTGCTCGGAGAAACGCGTTCTTCCATATCTCTCTCACTACTGGATGCAGGCTTCTCTCGCGGCTCGCCACCACCGGCGACACAGTGCCATTTATTCAGAATTAATGTTTTGATATTACATTCAAGACTGATTAGTGATTATATTATTGATATTGTTACTAGCTAA
Protein Sequence
MPLKLLHFDLRPVVHLTTNTVFVEYVMERRLDLIQSWVASRGTGSTMYRTRPGSTPTVATDGNVERVVASVTESPRLSFRAHSSILRIPKWTLQVTMRKKTIVQELHDPDPAETILSRKSGRKVQAQRKFAQGAYVPPTSSNALDRASRVSDATNQDLHVHHSNMSTPNLLDVVTFRKIHPHAANPVVCLNRIDVQKKNDDNSNDNTLNHTGGQNPIFITTTHSIAPERQYSAIETTKEESEINCSSHSLALPISMRKRKSNEIDNNTSPTKKPRPETFRISGSRTTDINDSVTNDDTDDDRPLKYYMKKRKIVGVKKTQSRPNRLIRSKIITRSSKYVFGLPETVAIMKKIRRRIPVPSIDLNTVRKAKKSDVVQSPPVGANNIDTASPPTTSKDLVAKAVVTASMPETTSSTSQGTVVPCPSTFEEEPQALLEPQNTQEAPLPAQPTSNVPSPFVNITALPSKVQDGKQRKTDVTQLNILQRRDRRLQNFDKYDIRNWLSTMMPEGEQTKKFQSPKTPKRRMILRHVDGQNLTRPVETTNPNVYDFDSDDYDAVPSPSLSGFRQATRAFTENTGQHKSSRILYLDPRLSSIPNHVIQIGMPEKKEWMARLVPLSEVNQSNISMIQDDSLFDHMNSASGDAQKTLDDMRNRPSTSGHTSLQSTKPYGNVSKAKDTIDQTHISFSQLHRGLKNNSKVNKPSNNGDNGSQTSVNITIKEEQIVISDDEDVQNVVPGTGTPGLSLTTTLRESSLSEQFSQALSKKTDSEIDMQPAPVSQSLARVSEQTRKSENVKFYLDPTFTSSHKSQIIEITSIGEHLHARLVPATQIDNSIPMINYLASYDQMISNDVVNRKVQDETTPDRSQEDPQISNSPPSSTLSTSMTSTSSRKRSNSQRSACRQTINSKTPTKAKIVEAPVFYPTKDEFKDPIAYIEMMKPMLKKFGLGKVVTPPGFSPSCILDDQMRFSVVNQYIARMYSRWGHVSREMCTIRAHLATQGVVFTRAPLLDGIEVNLSKLYHVVQRHGGLKDVIQKKRWSKVAEEMGLPKGPKLEKKLDQIYLKYLVPYDTLSSKERQQRMATVEQLWNNKYRRMLDRAINPLHRQRRLLGESESSDEENDDEVTGFEGALKEAEDCVVQGRNMNLASFKKIAEKMIRMRWPNSTPSTERIEAEYWNVMQMGSDHQCVYSASVDTKHGYGFLNSDLYPDGKHPWNLKMLSKNKGNVLRFLNSVPGVSTLHLGMMHSTSCLHRDPHGLPFTEYLHEGSPKIWYGIPEDQSENFRKAVETLCPSYCQNKEVWLPSDIAMIPPNQLIERNVALTRVEQNPGEFILVYPQAYSCSICTGYTVSESAYFATKHWLDNAYPIFQNLRESCEPTMFPLEQLLLSAGKDPSISSALLQRVYAPLCTIVWEELGQRRALESLGIPSQRHIERPGDKRRPPSPRSKLKLKAQQSDECEICRATLYLSHVTGITDVMSPMCIQHALRVLHSPKFKGRSLTSIDLTCFYSAAELETLLQNVERRLATSNSCSVHLLGETRSSISLSLLDAGFSRGSPPPATQCHLFRINVLILHSRLISDYIIDIVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-