Snon016964.2
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- B0310.2
- Assembly
- GCA_017933935.1
- Location
- JADWQK010000857.1:1403072-1469125[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.28 43 6.5 1.2 1 23 452 474 452 474 0.92 2 10 0.011 1.6 11.0 5.6 1 23 481 504 481 504 0.96 3 10 0.00016 0.024 16.7 2.9 1 23 535 558 535 558 0.98 4 10 0.26 40 6.6 0.5 1 13 562 574 562 585 0.83 5 10 4.5 6.9e+02 2.7 0.1 2 19 597 614 597 617 0.78 6 10 0.95 1.4e+02 4.8 0.1 3 23 662 683 660 683 0.95 7 10 0.22 33 6.8 0.6 2 20 702 720 701 723 0.89 8 10 0.00013 0.02 16.9 2.9 1 23 729 752 729 752 0.93 9 10 9.3e-05 0.014 17.4 0.4 1 23 759 781 759 781 0.98 10 10 0.051 7.8 8.8 5.9 1 22 787 808 787 810 0.85
Sequence Information
- Coding Sequence
- ATGGCTGACTGGGAGTCCAAAGATAGAAGCACTATGTGCTCTGAACATTTCATGAATGATCATACCTATGAGACCAAGTGTGGGTTGAGTACGACAAAATGTGGAGCAGTGTCTGTTGTTACTACTGACTCCGAAGATGATCTTGATGCACCAGCCGCATTGAGgGTATGCCGAATATGCCTTGCAATGGACAGCAAAATGTACCACATACGGGAATTGAAGCTGGATCAGATGTATGAACAAATCACTGGATTGATGGCTACTTCAGAAGAGCGTCTACCGCAGCGTGTGTGCTGGGAATGCGCCGGTCGTCTGAACTCGGCGTGTCGCTTCAGAAATAAGGCTTTGCGCAGTGATTCGCTGTTACATGACAGGATGCAGTCCGACACATATATAAAAATTCGGGACATAAAATCGATAAACCGCAAACTTAACCAACTCAGCTCAACCCTAGTACATCAAATATATGAGGATGACGATTTTGATCTTCGCATCATAGAGCTCTGTAGTACAAAAGCCGAAGAAACACCAAACATCACCGAAGTCACATCTATTCTTAGTGAAGAGTTAGATCCTAAAAGTCTCGCTCCTATTAACGAAGTTGAAATCCATGCCGAAAGTAATAACGAGATATTTTTTGAAGAATATGATCATTTTGATGAAGACGGTGACAATGTTCTAAGTGAGGTTTATGTCGAGAATAAAGAGAAGCCTAAGGttaaaaagagagaaaaagttGCTAGGAAAGTTAGAACGCCAAAGAAAGTTCAGGAAGAAGAGGATCTGGAGACTACTATAAACGAAGTTGAAATCCATGCCAAAAGTAATAACGAGATATTTTTTGAAGAATATGATCATTTTGATGAAGACGGTGACAATGTTCTAAGTGAGGTTTATGTCGAGAATAAAGAGAAGCCTAAGGttaaaaagagagaaaaagttGCTAGGAAAGTTAGAACGCCGAAGAAAGTTCAGGAAGAAGAGGATCTGGAGACTACTATAAACGAAGTTGAAATCCATGCCAAAAGTAATAACGAGATATTTTTTGAAGAATATGATCATTTTGATGAAGACGGTGACAATGTTCTAAGTGAGGTTTATGTCGAGAATAAAGAGAAGCCTAAGGttaaaaagagagaaaaagttGCTAGGAAAGTTAGAACGCCGAAGAAAGTTCAGGAAGAAGAGGACCTGGAGACTACTATAGATAAGTACAAGAAAAATGATGTGAAACGACGTCGGAATAGGGAAGAATTCGACGAGTCTCTGTTCACGATCACCCCGCTGACTTATGATCAACAAATAGAAGAAGTATTGAAAAGAAAAGAGAGTTATAATTACACTAGTGCTCCTTATAAATGTACGATATGCTATCGAGGGTTCCAGATCAGGGATCGATTTACAGCTCATTCCGTCAGACATGCTGAGCAACGCGGTGCCTACGAATGTTTTATCTGTAAAGCTAGATTTAAATCCTGTCACACCCTCCGGACGCATCTAACAGTGCAGCATACAGAGCAGTACAGTTGTAAGGTGTGTCCTTTCACGACTAGATTTAGACCTATAGCGAAATCACACGGGATTTGGCATGCGGGGAAAAAATACCAGTGTCCACATTGTGATAGTGTGTTTGATAAAAAGACGTCGTACTTCAGCCATATTCGTATAAAACACGTTTCGGACTTCGTCTGTGACCTCTGTGGTTATACGTTTGTTAGTGAGATGGGAATAGCTttccacaagaaaaaaaaacatcggtTCGATAAAGAGCTAACGTTAGAAGGTCCTTACTGTGAAGTGTGTGACGTCAAGTTCGTTTCTGAAGAAGCTCATGATAGACATCTGAAGTTATCTTCAAAACATAGCAGTGATCATGACCCGAACCGAATTCGGAATGACTCGCAAATCCACGGGCCCGTTACGAGACGCAGTGGACAAGGGCCGGTCAAAGACCCTGATCACGAGAAGCAGGCGCCGGTCAACTGTGAAGAGTGCGGCGTGCAACTTCGCGATTTGCGAGCGTACGGGCAACACTTCAGACGAGCTCACCCGGAGAAGAGCCGAACCAAGACCAACAATACTAACATAAACAAGAGCCCTGTTATGTGTGAACAGTGCGGCAAGATATACCAGAATCCTTTTCTACTAAAATGTCATATGTGGGTCCACACTGGTGAGAAAGGTTACAAATGTGACCTATGTGGGAAAAGCTTCTCGCATAAAACTACTGTCAAGTTACATAAAGTGAGAGTCCACAGCGGCTCACGACCCAGCTACGAGTGTCCTCAGTGTGGGAAACAGTTCGCGTTCAGCGCTAATAGAGATCGACATATGTTTATACACTCAGGCTTGAAACCCTTCAAATGTGACACGTGCGGCAAATGCTTTACTACAACGACCGAGCATAAGGCGCATGTTGATCATGTTCActtaaagaaaccgtggcccaagCGAGCTAGGCAGAGAAACAGGGCTAAGCAATGCGATGACGTTAGTGTTGAGGACTGA
- Protein Sequence
- MADWESKDRSTMCSEHFMNDHTYETKCGLSTTKCGAVSVVTTDSEDDLDAPAALRVCRICLAMDSKMYHIRELKLDQMYEQITGLMATSEERLPQRVCWECAGRLNSACRFRNKALRSDSLLHDRMQSDTYIKIRDIKSINRKLNQLSSTLVHQIYEDDDFDLRIIELCSTKAEETPNITEVTSILSEELDPKSLAPINEVEIHAESNNEIFFEEYDHFDEDGDNVLSEVYVENKEKPKVKKREKVARKVRTPKKVQEEEDLETTINEVEIHAKSNNEIFFEEYDHFDEDGDNVLSEVYVENKEKPKVKKREKVARKVRTPKKVQEEEDLETTINEVEIHAKSNNEIFFEEYDHFDEDGDNVLSEVYVENKEKPKVKKREKVARKVRTPKKVQEEEDLETTIDKYKKNDVKRRRNREEFDESLFTITPLTYDQQIEEVLKRKESYNYTSAPYKCTICYRGFQIRDRFTAHSVRHAEQRGAYECFICKARFKSCHTLRTHLTVQHTEQYSCKVCPFTTRFRPIAKSHGIWHAGKKYQCPHCDSVFDKKTSYFSHIRIKHVSDFVCDLCGYTFVSEMGIAFHKKKKHRFDKELTLEGPYCEVCDVKFVSEEAHDRHLKLSSKHSSDHDPNRIRNDSQIHGPVTRRSGQGPVKDPDHEKQAPVNCEECGVQLRDLRAYGQHFRRAHPEKSRTKTNNTNINKSPVMCEQCGKIYQNPFLLKCHMWVHTGEKGYKCDLCGKSFSHKTTVKLHKVRVHSGSRPSYECPQCGKQFAFSANRDRHMFIHSGLKPFKCDTCGKCFTTTTEHKAHVDHVHLKKPWPKRARQRNRAKQCDDVSVED*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -