Snon042555.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010002113.1:252385-293404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.059 8.9 8.6 1.4 1 23 215 238 215 238 0.95 2 15 0.072 11 8.3 1.8 3 23 247 267 245 267 0.97 3 15 0.015 2.2 10.5 0.1 2 23 303 325 302 325 0.96 4 15 7.5e-05 0.011 17.7 1.4 5 23 330 349 329 349 0.96 5 15 1.3e-05 0.002 20.1 1.5 1 23 355 377 355 377 0.97 6 15 6.4 9.7e+02 2.2 0.6 2 22 387 407 387 411 0.91 7 15 6e-05 0.0091 18.0 2.9 1 23 415 438 415 438 0.91 8 15 0.013 2 10.7 2.7 1 23 444 467 444 467 0.95 9 15 0.5 77 5.7 0.7 1 10 475 484 475 489 0.87 10 15 0.038 5.8 9.2 1.8 1 23 718 741 718 741 0.96 11 15 0.00049 0.075 15.1 0.5 2 23 749 770 748 770 0.96 12 15 4.7 7.2e+02 2.6 0.4 2 23 806 828 805 828 0.89 13 15 0.00084 0.13 14.4 1.2 3 23 832 853 830 853 0.97 14 15 1.7e-05 0.0026 19.7 2.2 1 23 859 881 859 881 0.98 15 15 7 1.1e+03 2.1 0.2 3 19 892 908 891 911 0.75
Sequence Information
- Coding Sequence
- ATGTTCCAGTCCTTGAATATAATACCGCTAACAACATTGACTTTAAAAACCAGCGTTTGCTATGACTATCAGTTCACATATAACTTGGACCCTCTAACTAACTGTTACACCAAACTAAAGGCTGAACCAGAAACAATAAAACAAGAAATCATAGACCAAAGTGAAAACATAGACAATTCATCAgatgttgatgaaataaaatctaattttaatgaagaagtaaacattgtttatgataatgacatagaaagaaaacacgatGTTATGTTAATGAGGGAACTAGATCATATTGTCTCTGATAAGGATGCTAGCATAGACAATGCATCAGATTCAGATGATAAAACTACAGACTGTGATGATAAATTATCTGAAATACCCGATATAATAGAAAATGTCTACGTCGATATGCTTGAAAATAAACTTATCAACAAACCCTTTAAAagacaacaaaaatattcacAAGCAATCAAAACTGTCatgaaaaatcaaaataaacatCTACTAAAAAGAAAAGCAGAAAAAGACATGGAGGGAGATGTGAAAGATTTTCAAGAAAAGTTCGTTCGAGTTGTGTTGAGTGAAGAGGAAATGTTAAAAGCAAGAGAAAACAAAAGAGATCACCATAATTTCAAGAAGCTTCCTTATAAGTGCGACAGTTGTGTACTTGGGTTCACAAGGAAGGACACTTATATCTTACACTTTGAAAAGAAGCATGATGAGAGTAACGGCGACCAAATCTGCGATGTATGTAACATTCGCTTACGTCATAAGCTAGCACTGAACAACCATAAGAATAAGCATTATGTGGTGTACAGGTGTCGACTGTGTCGGTATGAGGCTCATAACTTCAAGTCGGCTGCAAATCACTGCAAGACTAAACACGCAGCGGACATGCCTAATAACATACATTGTTCTCAATGCACTGCTGTGGTCAAAGCCCCGGACGATTTAGAAACACACATGCAAACGGAACACACTGTGTTCTGTGACTGTGGTATCAAATTCAAAGACAAGAAAAATTTAAGAAGACATATGAGtAGGGCCCACTCCCTATTAAGCAGCTTTATATGTGATATTTGCAAGAAAACCTTCAAAACTAAGATGCGGCTGGAAAGTCACATGGCACGGCATAGCGGTATTATAGCGAAGAGATTAGCTTACTGTCAGCAGTGCAACGTACAATATAAGAACATACaagtctataggatgcatttgagGTCCAGCGCCAAGCACTCCGAGGGATACCCATGTTCAGAGTGCAATAAGAAATTCAGATCAAAAGGGTACTTGAAGCAGCATTACGACTTTTATCATTTACGGAAATCGCAGTACAAATGTGAAGTTTGCAATAAGCTTTTCATTTCAAATTGGCGTTTACATAATCACAAGCAACTTTACCATGGTCTGAGTCGACCTAGGAACCACTCTTGCAACACATGTGGCAAGAAATTCTTTCTACAAGAATCACCAGGTGGAGTATGTTGGGAATGCCGGAGTATCCTGACTAAGTTCTACAGACTCAAAACCAGAGCTAAGATAGCTCAGAAGACCTTACTGCACACTACAGAGcatttaaatataaaatctttGACAACACTGTCTAAAACCAGTACTTTAGATCACACTTACGATGTCGTGTCAACAATCAGCTGTGACAATGAACTAAAATTAAACCCAGATTCTATTAAACAAGAAAATGTAGACCAAAGTGATGATATTAAAAGCCAAAATGATGATAATTTagcaaaaaaatatgaaaatttagacCAAATTGATGATAGTTTGGACGATACTTTAGTCATAGATGAAGATCGAATTGAAccggaaaaatatgaaaatttttatGCAGAAGGTGatcaaatagaaaataaatacaatgatcAGTTGTTCGGGGAAcgggaatatttttttcaagatGGAAAAGGTATCTTTAAAAATACAAACGAAAAAACTAATGAAATCGAAACTACAAGTACTGCCCATGGACAAAAAAATGATGACCTCAGAAAAGACAAACAAATATCACCAAAAGCTAGAGATGTAATTGATGAAGACTTCAAAGAGAAGTTCGCACAAGTTGTTATGAGCGAGGAAGAAATGGCAAGAGTCAGAGACGAGAAAAGGAATCAGCCGGCTTTTAGGATACTTCCTCATATATGTGACGGTTGTGTGCTGGGGTTTAGAAAGGAGGATAAATATAGGAGTCACATTAAGAAGAAACATGATGAGAGCATCGGCAGTCTCATCTGCGATGTTTGCGGTGTCAGATTTCCCCACAATCTAGCGTTAATCAAACACAAGAGGAAGCACTATGTGGTATACACATGTAAACTATGTAAATATCAAAGCAACAACCTACGCTCATCGTTCAAGCACTGTAAGGCTAAGCATGCAGCTGACAAACTTGATTGCATTCACTGTTCACAGTGTGATTTTATTGCCAAAAACCCACAAGAAATGGAAGAGCATAAAGAATGGAAACACCTGTTCTGGTGCAACGAGTGTGGAGAGAAATTCACATTAAAAACTAATATTAGAACACATATGacCCGAACTCACGCGCCAAAACGTGCTTTCAAATGTGATATTTGCAAAAAAGGTTTTAATACAAAGACGAAGCTGGAGTCTCATTTGTCCAGACATGATGATAACTACGCCAAGAAGCTCGCCTTTTGTGAAAAATGCAATATTCAATTCAAGAACATACTCATATACAGGGCGCATTTGAGAAATTCAGCAAACCATTCAGACGGGTAA
- Protein Sequence
- MFQSLNIIPLTTLTLKTSVCYDYQFTYNLDPLTNCYTKLKAEPETIKQEIIDQSENIDNSSDVDEIKSNFNEEVNIVYDNDIERKHDVMLMRELDHIVSDKDASIDNASDSDDKTTDCDDKLSEIPDIIENVYVDMLENKLINKPFKRQQKYSQAIKTVMKNQNKHLLKRKAEKDMEGDVKDFQEKFVRVVLSEEEMLKARENKRDHHNFKKLPYKCDSCVLGFTRKDTYILHFEKKHDESNGDQICDVCNIRLRHKLALNNHKNKHYVVYRCRLCRYEAHNFKSAANHCKTKHAADMPNNIHCSQCTAVVKAPDDLETHMQTEHTVFCDCGIKFKDKKNLRRHMSRAHSLLSSFICDICKKTFKTKMRLESHMARHSGIIAKRLAYCQQCNVQYKNIQVYRMHLRSSAKHSEGYPCSECNKKFRSKGYLKQHYDFYHLRKSQYKCEVCNKLFISNWRLHNHKQLYHGLSRPRNHSCNTCGKKFFLQESPGGVCWECRSILTKFYRLKTRAKIAQKTLLHTTEHLNIKSLTTLSKTSTLDHTYDVVSTISCDNELKLNPDSIKQENVDQSDDIKSQNDDNLAKKYENLDQIDDSLDDTLVIDEDRIEPEKYENFYAEGDQIENKYNDQLFGEREYFFQDGKGIFKNTNEKTNEIETTSTAHGQKNDDLRKDKQISPKARDVIDEDFKEKFAQVVMSEEEMARVRDEKRNQPAFRILPHICDGCVLGFRKEDKYRSHIKKKHDESIGSLICDVCGVRFPHNLALIKHKRKHYVVYTCKLCKYQSNNLRSSFKHCKAKHAADKLDCIHCSQCDFIAKNPQEMEEHKEWKHLFWCNECGEKFTLKTNIRTHMTRTHAPKRAFKCDICKKGFNTKTKLESHLSRHDDNYAKKLAFCEKCNIQFKNILIYRAHLRNSANHSDG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -