Snon032481.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010001571.1:4286025-4327916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.21 13.7 0.9 1 23 209 231 209 231 0.98 2 12 0.0095 1.4 11.1 0.6 1 23 238 261 238 261 0.94 3 12 0.046 7 8.9 1.7 1 23 265 287 265 287 0.96 4 12 0.00062 0.094 14.8 4.4 1 23 292 315 292 315 0.98 5 12 0.00019 0.029 16.4 2.6 1 23 319 342 319 342 0.96 6 12 0.036 5.5 9.3 0.1 3 20 363 380 362 381 0.95 7 12 0.0012 0.18 13.9 0.1 2 23 395 416 394 416 0.96 8 12 2.3e-05 0.0035 19.3 1.9 1 23 435 458 435 458 0.97 9 12 7e-06 0.0011 21.0 1.9 2 23 468 489 467 489 0.97 10 12 7.3e-05 0.011 17.7 2.9 1 23 495 517 495 517 0.98 11 12 1.9e-06 0.00029 22.7 0.3 1 23 523 545 523 545 0.98 12 12 5.7e-06 0.00087 21.2 1.5 1 23 551 574 551 574 0.97
Sequence Information
- Coding Sequence
- ATGCTGGCATGTTTCTTCTGCTATGCCAAACTGAAGCAGAGTTATCAACTGCAGAAAAAATGCCTGGAAGCCGAAGAGTTGTTGACACAAATGTTGAGCGAGGACTGTGAGataAAGCCGTTACAGTTAAAAGATGACGAAGAATATTTTGGTGGCTTCATTAAAACATCAATTCAACATTTAAGTATAGTTGATGTTTGCCAAGCAAAAAGCAACCCTATCAAGGAAGAAATACCGGCTGTTTGTGTGGTTCAAGATGATGATTTAGATCTGAAGGTGGAACGTAAAACTGATGGGCTGGAACCGGATAATTTAGAATGTACCTATCAAGATGCAGAAGATACACAAGCGCACCATTCTGAATCAGATTCAGAAGACGATGTGCCTCTGATGAAGTTCAAAACTGAAGTGGAAGACCAGGAAGTAATGAAGAAGAAAACGGTGCATAAGAAAAAATgCCGTAAGCCAGATTGTAGCGAAATAATTTTGAGTGAGAAGGAACAGAGAGACAACTTGCAGGCCAGGTCCACCTCGTCCAACTGTAGCAAAATAATTTTGAGTGAAAAGGAACAGAGAGACAACTTGCAGGCCAGGTCCACCTCGTCCAACTACTTACACTCTCCATTCAAATGCAATCTGTGTTATAAAGGATTTGTCGACACACGGGCCTATGATAATCATATGATCAAACACGAGTTGCGTAGCGGTGCGCACGTGTGCGAGATCTGCCAAATGCGTTACCGCTCCGTACAGCTACTGCGCACACACGCAAACAACGCACATGCACGCATTTTTAAATGTAATACATGTGGCTACGTATCTCATACAAGTAATCAAGCAAGAATTCACGAGAAATGGCACAACGGACACACCTACGAATGTCAACTATGTAGTCACACGTTCAGGAAACCAACCTCATATCTGTCTCACATGCGCAAGAGACACCCCACGGAGCACGTCTGCAACATTTGTGGAGAAACTTTCGTCGGAAAACATGGACTACAAATGCATAAGAAGAAAACGCATATTAATGGCGAAAAGATGGTCGATGCCAACGATGTGGATGACCCAGCTTCTAAAAGATTCTGCGCTGAGTGTAACATACAGTTTTACAACTCTGAAGCGTGGAAGCGACATATACTCTGCTCCGTCAAACATACGCTCAAGACTGAAGAAAGCAAAAGCTGTTCAATCTGTCCTTGGACGTACGCCGGCAATGTGTCTCTGGAGACACATATGAGTGAACATGCGAAAGCATTGCGGCGCTCTCGGAAACCACCCGCAACGGCTAAAGAACGCATTTTTAGATGTAATCAGTGTGGCTCCAGCTTCATTACGCGGTCAAAACTCCAGACGCATGTCAATAGAACTCATTTAGGACTCAAATACAACAAGAACATCGTTTGTGAGGTGTGCGGGAAGAAGTGTACGtcaaACGCAACCCTGAAATATCACCAACGCACCCACACAGGGGAGAAACCGTACTCGTGTGGGAGTTGTACGAAACACTTTGTGGACAGTAATCAACTTAGAATACACACACGGACGCACACTGGCGAGAAGCCCTACGTGTGTGCGGCCTGCGGGAAGCGGTTCACACAGAAACCAGCGCTGAACAGACATTATAGGGTACACACCGGCTTGAAGCCCTACATTTGTCAATATTGTTCAAGAACATTTAGCCAATCTAATTCATTGAAACTTCACGTGAAGACCGTTCACCTCAAGCAACCCGCTAACAGTAGGAAAACTAAGGGAAGGAGCGAAAAAAGTAATATGGAAAAAAATTGTGAACCATTAAAAATTGGCCCATCACTAGAGGGTGTTAAGGTTTTCGTAAAATGA
- Protein Sequence
- MLACFFCYAKLKQSYQLQKKCLEAEELLTQMLSEDCEIKPLQLKDDEEYFGGFIKTSIQHLSIVDVCQAKSNPIKEEIPAVCVVQDDDLDLKVERKTDGLEPDNLECTYQDAEDTQAHHSESDSEDDVPLMKFKTEVEDQEVMKKKTVHKKKCRKPDCSEIILSEKEQRDNLQARSTSSNCSKIILSEKEQRDNLQARSTSSNYLHSPFKCNLCYKGFVDTRAYDNHMIKHELRSGAHVCEICQMRYRSVQLLRTHANNAHARIFKCNTCGYVSHTSNQARIHEKWHNGHTYECQLCSHTFRKPTSYLSHMRKRHPTEHVCNICGETFVGKHGLQMHKKKTHINGEKMVDANDVDDPASKRFCAECNIQFYNSEAWKRHILCSVKHTLKTEESKSCSICPWTYAGNVSLETHMSEHAKALRRSRKPPATAKERIFRCNQCGSSFITRSKLQTHVNRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYSCGSCTKHFVDSNQLRIHTRTHTGEKPYVCAACGKRFTQKPALNRHYRVHTGLKPYICQYCSRTFSQSNSLKLHVKTVHLKQPANSRKTKGRSEKSNMEKNCEPLKIGPSLEGVKVFVK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527600;
- 90% Identity
- iTF_01339281;
- 80% Identity
- -