Snon049986.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010002441.1:45396-50222[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0052 0.79 11.9 0.7 1 21 98 118 98 119 0.96 2 16 0.0038 0.57 12.3 0.2 2 23 191 212 190 212 0.97 3 16 0.00047 0.071 15.2 0.1 1 23 216 238 216 238 0.97 4 16 0.091 14 8.0 0.1 1 23 243 266 243 266 0.80 5 16 0.00019 0.028 16.5 0.9 1 23 272 295 272 295 0.97 6 16 0.0019 0.29 13.3 1.1 1 23 302 325 302 325 0.97 7 16 1.3e-05 0.0019 20.1 0.8 3 23 334 354 332 354 0.97 8 16 6.7e-07 0.0001 24.1 2.5 1 23 360 382 360 382 0.98 9 16 0.018 2.8 10.2 0.2 1 23 487 510 487 510 0.94 10 16 0.14 21 7.4 0.1 2 23 537 558 536 558 0.96 11 16 8.3 1.3e+03 1.8 1.5 1 23 580 602 580 602 0.90 12 16 2.3e-05 0.0035 19.3 1.0 1 23 606 628 606 628 0.98 13 16 2.3 3.5e+02 3.6 0.2 1 23 633 656 633 656 0.85 14 16 0.025 3.8 9.8 1.0 1 23 662 685 662 685 0.90 15 16 0.002 0.31 13.2 0.3 1 23 692 715 692 715 0.97 16 16 5.3e-06 0.00081 21.3 2.0 1 23 722 744 722 744 0.96
Sequence Information
- Coding Sequence
- ATGGTTAGTTTGATAGCGTTACACGCCATCGATCGAACAGAATTAGAAGATCCAAGAAGGGAGAAAAATGGACGCGGAAAAGTTACGAAGAGATCTGACgaaaattttctatttttaggACAAAGCTGGCAAACGAGCGAACAAATCGAAGGTGATTACGAAATAGAAAAGTTACCCAAGCCGAAATACACCCGAAGTGCTAGAGCCGAAGCGAGAATTATTACCAAGAATAACGCTTCCGCCATCCTTGAGTGTTGGTCCCTTCAACCTTTCAGATGGAAGAAAAACAGATTCAAATGTGCCTACTGCGAGGATAACTTTACAGACTGCTCCGAGCTCAGAGATCATGTCAGAATCTGCTCCCAAACTCATAGCATCAAGGACATTTAtagtaaatttaaagaaatgcCACTTATCAACGTTGATATCACTGAAGCTGTATGTTCCTTGTGTGCTCTTCCACTGACAAATGCCGCTCAAATAAGAGAACACGTCATTGATCATGGCTTAGATTTCAACCCGTATCATCCTGACGGTGTACTACCATTTTGTTTAAACAAACAGTCCTGGCAATGTGTTATATGCCCTGAAAAATTCAACAATTTTTTGAAACTTTACGAGCATATGAACATTCACTATCAACATTATATATGTGCGACTTGTGGGAAAGGATTTATGACTGCACCTCGATTGAGAAAACACTTAGAAGTCCATGTCTCAGGATCGTTTCCTTGCAATAAATGTGGTCGAATATTTATAATGAGAGCCGCAAGGGACTCGCACAAAGCCTCCGTCCATCCGAAAGCTCCGAGATACGAATGTCCTCATTGCAATATAAGGTTCGACAATTATTACGAGAGGATTGCTCATATGAAGAACGCTCACAGCGAGCGGGAGGTGTTCTATAACTGTGCTCACTGCGAGATGTCATTCAAAACCAGCGGGAAACGCGCCATTCATGTCCGGACAGTCCATTTCCCTCCACAATTGAACTACGGCTGCAGTTATTGCGAATGGCAGTTTAGAACCAACTATGAGTTAAAAAGACACATGGTTCGTCATACAGGGGAGAAGAATTTCCATTGTTCTGTGTGCGGGAAGTCTTTTCCAAGAAGCAAGGCGTTAACAACGCATTTGAAGACCCATCAAGATGTTAACGGCAAATGGCGTGGGCCCGTGTTTAAGCAGAGGACGCAAAGGCTGCCTTCGATCAACCCCCATGATTTGACTGATTTAGTTCCTAGTTCCGCTAAAGAAGCGGAGGGAAAGCTAGGCGTTAGACGCATTAGGAAGTTAAAGGAAAATGTTAGCGATCGCCAGATGCGAAGGCGAAGACGCGCCAACAACCAGCTCCCGGAAGAATCAGAGAAAAGAATATCGAAAACCATGATGCGTCGCAACGCACTGATACTTCTAGAATGTTCAACAGCCTGGGCCTTCCGATGGTTCCATAGCGCTTTTTACTGCTCATACTGCGACGCTAAGTTCGTTGATGTACCTGTACTCCGCACACATGTGAAAGCTAACCATCTTAACGAGTTACCCACTGACAGAATCTTCTCTaagttaaaagaaaataatatggtTAAAGTAGACGTAGCTGAGCTTAGCTGTAGGTTATGTAGCAGGATTCTAAATAGCATTGACGCTTTAAAAGACCACATATTGATACACGGCAAGACTTTGAACGTAGAATACAGCGATGGAGTTCTCCCCTTCAAGTTGGATGAAGAAGGCTTCACCTGTCAGCTTTGCTTCGACCAATTCCTGACTTTCGCTAAAATGAACGAGCATATGAATACACATTTTCAAAATTACATTTGTGATTCTTGCGGAAAGGCTTTTGTTTCCAAATCTAGGTTTAGAAAACACGTTCAGTCACACGAAAAAGGCAGCTTTCCTTGCGGGGAATGCGGTGAAGAATTAGAAACACGAGCGTCTCGAATGTGTCACATAATGCGAATTCATAGAAAAGGCGTTCGCTACGCTTGCCCGAGATGCTCCGAAGTTTTCACAACTTACCACACGAGGGCAAAACATTTAGTAGAAACACACGCCCAACAAAGGAAAGAATACTATTGTAATGCTTGCGACAGAGTTTTTGAAACCAGCTCCAAAAGAGCGGGCCACATTCGCGTAACTCATGCGAATGTGGAAAAACAACATTTCTGCCCAAATTGCCCGTCGGTATTTGTTAGCAAATCTAAATTGCTGCGACATATGAGAACGCATAGAATAAAATACAACTGA
- Protein Sequence
- MVSLIALHAIDRTELEDPRREKNGRGKVTKRSDENFLFLGQSWQTSEQIEGDYEIEKLPKPKYTRSARAEARIITKNNASAILECWSLQPFRWKKNRFKCAYCEDNFTDCSELRDHVRICSQTHSIKDIYSKFKEMPLINVDITEAVCSLCALPLTNAAQIREHVIDHGLDFNPYHPDGVLPFCLNKQSWQCVICPEKFNNFLKLYEHMNIHYQHYICATCGKGFMTAPRLRKHLEVHVSGSFPCNKCGRIFIMRAARDSHKASVHPKAPRYECPHCNIRFDNYYERIAHMKNAHSEREVFYNCAHCEMSFKTSGKRAIHVRTVHFPPQLNYGCSYCEWQFRTNYELKRHMVRHTGEKNFHCSVCGKSFPRSKALTTHLKTHQDVNGKWRGPVFKQRTQRLPSINPHDLTDLVPSSAKEAEGKLGVRRIRKLKENVSDRQMRRRRRANNQLPEESEKRISKTMMRRNALILLECSTAWAFRWFHSAFYCSYCDAKFVDVPVLRTHVKANHLNELPTDRIFSKLKENNMVKVDVAELSCRLCSRILNSIDALKDHILIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFDQFLTFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECGEELETRASRMCHIMRIHRKGVRYACPRCSEVFTTYHTRAKHLVETHAQQRKEYYCNACDRVFETSSKRAGHIRVTHANVEKQHFCPNCPSVFVSKSKLLRHMRTHRIKYN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00274620;
- 90% Identity
- iTF_00746027;
- 80% Identity
- -