Snon050002.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sesamia nonagrioides
Gene Symbol
-
Assembly
GCA_017933935.1
Location
JADWQK010002441.1:270519-274067[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.81 1.2e+02 5.0 0.1 1 22 155 176 155 178 0.88
2 20 0.03 4.6 9.5 0.5 2 23 204 226 203 226 0.95
3 20 0.0073 1.1 11.4 3.3 2 23 249 270 248 270 0.96
4 20 0.0016 0.24 13.5 0.9 1 23 274 296 274 296 0.96
5 20 0.0017 0.26 13.4 1.1 1 23 301 324 301 324 0.96
6 20 0.028 4.3 9.6 0.4 2 23 332 354 332 354 0.91
7 20 0.0022 0.33 13.1 5.2 1 23 361 384 361 384 0.97
8 20 0.0019 0.29 13.3 2.4 1 23 390 412 390 412 0.97
9 20 0.00016 0.024 16.7 3.2 1 23 418 440 418 440 0.98
10 20 0.00014 0.021 16.9 1.7 1 23 446 469 446 469 0.97
11 20 2.8 4.2e+02 3.3 0.4 1 23 543 566 543 566 0.88
12 20 0.078 12 8.2 0.1 2 23 592 614 591 614 0.94
13 20 0.0021 0.32 13.1 2.3 2 23 637 658 636 658 0.96
14 20 1.7e-05 0.0026 19.7 2.4 1 23 662 684 662 684 0.97
15 20 0.0056 0.84 11.8 0.6 1 23 689 712 689 712 0.97
16 20 1.6 2.4e+02 4.1 0.3 2 19 720 737 720 742 0.76
17 20 4.4e-06 0.00067 21.6 5.8 1 23 749 772 749 772 0.96
18 20 4.9e-05 0.0074 18.3 3.1 1 23 778 800 778 800 0.97
19 20 1.2e-06 0.00019 23.3 1.1 1 23 806 828 806 828 0.99
20 20 2.3e-06 0.00035 22.5 0.7 1 23 834 856 834 856 0.99

Sequence Information

Coding Sequence
ATGTATAAATTTCTTGTTGTAGATGTCCTGATTGACAATACAACGAAATCCAAATTGGAACGATCTAAAAAGAAACTGAGGATTAAGCCCACCATGTTTAAAAACAAAGCATCTTTTTTGGacgaaaaaactaaaaaacttaTCGAGCTGAAtaaattaaaagcaaaaaacttaacaaatacGGCTGCGACTGCAGTAAAAGacgatgaaataaattataccGAAACAAAAGTAATTGCAATAGACATGAATATTGAACCTAAAATAGAAGAAATTGAAGTTCCTGTGAACGCGGATCAAGTGCGAACACGATACAAGGCTATAGTCAACGATAAATTCAAGAAAGAAAACAGAGAACCCGAAAAAACCGAAGTCAACGAAATGAATAAACATAAAGACAATATAAAGACTTTATTACAAAATTCTAACGCGACAATTATCAAAGGATTTTGGGGAACTGGTTATTCTTGTAATTTTTGCGACGAACAGAGAGAAGTTCCTTCAGAATTAAAAGGACATAATTTAGAAGCTCATAGCAATGTTGGGGACGAAGCTATCAAAGTAAAATATGTATCAGATTTAGTTATAAGACTGGACATTACAGATCTCAAATGCAAACTATGTAATGCAAGTTTAAACTCTTTAGAAGACTTTACGGCACATCTTACaaaaacacatttaaaattCATACATACAGATGTAAAAAACCATATTATTCCGTTTAAATTCAACACGGATATTTTACAATGCTGTATATGTAAGAAAGAATTTAAGTATTTCAAACTGCTTTCAGAACACATGAGTGAACATTATAGGAACTATGAATGCTCGGTTTGCGAGCGTGCGTTCATAAACAAACAATCCATGCAAACCCACAGTTATAGACACAACAAAGGTGTCTTCCAATGCTCACACTGCCCGAAAGTTTTCGACTCACGGCCGAAAAGAAGCGTCCATGAAAGAGTAGTGCACGCTTTGTccaacaaaactcgaaaatgcTCTCTCTGTAGCGAGAGATTCGCTACGAAAGACTTAGTTCAAAGCCATGAGGTCAAAGCCCATGGCGTGGAACCTACAGTATTCTCCTGCCAGGCTTGCAATAAGTCGTACCACAGCCAGAGTTCGCTGACGACGCATAGAAAACGATACCATTTAATGTTGAGACCTCACAAATGTTCGTATTGCGAAATGGCATTTTTCTCCAAGATCGAGTTGCGTTCCCATACGGTAACTCATACAAAATCAAGGGATTTCAAGTGTGATTTGTGTACAAAATCTTTTGGAACTCGATGTAGTCTTAATCAACATGTTAGGGGACATTTAGATGATAGGAGGTTTAAATGTGATAGTTGTGAAAGAACGTTTGTTCATAGAACGGCGTGGAAGGTGCATATGAGAAATGCCCATGGGAATAAAAACGCTACAGTAAAAGAAACTGACAAAGCTAATAGCAACGCACGGTTAAATAAAGctcaggataacaaaaacactaAACAGGCTGATGATGAGAAAGATTTGAATAGTATACAGAAAAACAGAAAACTTCTGGCAAAGTTCAAAGAAACTGTACGTTGTATACTAAAATGCACGAACGCTACTCCAATCAGAGGCTACTGGGGCATCGGTTATGCTTGTATCTACTGCAAATTTCAAACCCCTGAAATATCAGCACTGAAAAAGCACACTCTAACAACACATTCCGAAAATGTTGACGAGCTTGACAACGTTAAATACATTTCAGACATGATCATAAAACTAGACATTACAGACCTCAAATGTGAAATATGTGACCGTAAAATAGAAACCCTTGAAGAAATCATGAACCATATAAAATTTATTCACATACAACCCATACATTTCGAAACTGTTAATCATATCGTTCCATTCAAATTTGGCCAGAAAGATTTATCATGTGCTCTTTGTCCTAAACAGTTTGAttatttcaaacatttatttgAGCATATGAATAAACACTTTCCAAACTATACATGTCCAGAATGCAATCGTTGTTTCATTAACTTACGCTCTTTACGAACGCACTTGGTAAGACATAAAACAGGCACGTTTGTCTGCTCCTTTTGCTCCAAAATCTTCGACACTAAAATCAAAATGATGGAACACGAAAGGGTCTTACACCTAAAAGGTTCTAAAAATCGTAAATGTGGGTATTGTGACGAGAGATTCATGGATGCTGTAAGGAAGACGGAACATGAGGTAAAGGAGCACGGCGCTCCAGTTCGCACATTCCCTTGCAAGTACTGCGGGAAGTGTTTCGACAGTCAACGTTCTTTAAAGAATCATATGAACCATCTACATTTGCAGCTTCGACCTCACAAGTGCCCGGAGTGTGACAAGGGATTCTATAATAAAAATGAGATGAAAAGACACAGAGTAAAACATACTAATATCAAGCAGTTTCAATGCTCGATTTGCTCCAAAAGCTACGCTTATAAAGCTTCCCTTAGAAACCACATGAAGATACATGACGGCGAAAAATCTTATACTTGTGAGACATGCGGCCAATCTTTCACACAGAAGAATCTTTGGGTGAACCACATGATGACTCACACGAAAGCGGAATCTCCGAGCCGCAGAGATTAA
Protein Sequence
MYKFLVVDVLIDNTTKSKLERSKKKLRIKPTMFKNKASFLDEKTKKLIELNKLKAKNLTNTAATAVKDDEINYTETKVIAIDMNIEPKIEEIEVPVNADQVRTRYKAIVNDKFKKENREPEKTEVNEMNKHKDNIKTLLQNSNATIIKGFWGTGYSCNFCDEQREVPSELKGHNLEAHSNVGDEAIKVKYVSDLVIRLDITDLKCKLCNASLNSLEDFTAHLTKTHLKFIHTDVKNHIIPFKFNTDILQCCICKKEFKYFKLLSEHMSEHYRNYECSVCERAFINKQSMQTHSYRHNKGVFQCSHCPKVFDSRPKRSVHERVVHALSNKTRKCSLCSERFATKDLVQSHEVKAHGVEPTVFSCQACNKSYHSQSSLTTHRKRYHLMLRPHKCSYCEMAFFSKIELRSHTVTHTKSRDFKCDLCTKSFGTRCSLNQHVRGHLDDRRFKCDSCERTFVHRTAWKVHMRNAHGNKNATVKETDKANSNARLNKAQDNKNTKQADDEKDLNSIQKNRKLLAKFKETVRCILKCTNATPIRGYWGIGYACIYCKFQTPEISALKKHTLTTHSENVDELDNVKYISDMIIKLDITDLKCEICDRKIETLEEIMNHIKFIHIQPIHFETVNHIVPFKFGQKDLSCALCPKQFDYFKHLFEHMNKHFPNYTCPECNRCFINLRSLRTHLVRHKTGTFVCSFCSKIFDTKIKMMEHERVLHLKGSKNRKCGYCDERFMDAVRKTEHEVKEHGAPVRTFPCKYCGKCFDSQRSLKNHMNHLHLQLRPHKCPECDKGFYNKNEMKRHRVKHTNIKQFQCSICSKSYAYKASLRNHMKIHDGEKSYTCETCGQSFTQKNLWVNHMMTHTKAESPSRRD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00758482;
90% Identity
iTF_00123582;
80% Identity
-