Snon034733.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010001689.1:319104-323328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.078 12 8.2 0.3 1 23 28 51 28 51 0.92 2 20 0.08 12 8.2 0.1 2 23 78 100 77 100 0.96 3 20 0.015 2.3 10.4 2.0 2 23 123 144 122 145 0.94 4 20 0.00038 0.057 15.5 0.6 1 23 148 170 148 170 0.98 5 20 1 1.5e+02 4.7 0.7 1 12 175 186 175 188 0.90 6 20 0.0017 0.26 13.4 0.7 2 23 206 228 205 228 0.95 7 20 4.3e-06 0.00065 21.6 2.1 1 23 235 258 235 258 0.98 8 20 2.2e-05 0.0033 19.4 1.3 2 23 265 286 265 286 0.97 9 20 1.1e-06 0.00017 23.5 0.9 1 23 292 314 292 314 0.98 10 20 5.8e-06 0.00088 21.2 0.5 1 23 320 343 320 343 0.98 11 20 0.24 36 6.7 1.5 1 23 458 481 458 481 0.92 12 20 0.039 5.9 9.2 0.1 2 23 508 530 507 530 0.96 13 20 0.0002 0.031 16.3 0.9 1 23 552 574 552 574 0.98 14 20 0.00032 0.048 15.7 0.3 1 23 578 600 578 600 0.98 15 20 3.7 5.7e+02 2.9 2.8 1 13 605 617 605 628 0.88 16 20 0.086 13 8.1 2.6 2 23 636 658 635 658 0.92 17 20 0.00014 0.022 16.8 2.4 2 23 666 688 665 688 0.95 18 20 0.00036 0.054 15.6 2.0 2 23 695 716 695 716 0.97 19 20 1.2e-05 0.0017 20.3 2.6 1 23 722 744 722 744 0.99 20 20 4.6e-05 0.007 18.4 3.3 1 23 750 773 750 773 0.98
Sequence Information
- Coding Sequence
- ATGGACAAACATTTGCAGAATATTCGTAATATACTCTTTTACTCCAATGCTACTCCTATCAGAAAACAAACAGGGAATGGTTATTTGTGTGGCTTCTGTTCAGAAGAGTTTATACTTCCAAAGGATCTTAAGACACATACATTACAAACACATGACAATGAAACAAAAAGTAGTTTCATGAAAGGTTGCATCATGTTTGACTACATCGTTAAATTAGACATCACTGGTCTGCAGTGCGAAATATGTGATCAAAATATTGACGGGTTAAAGTCACTGATGAATCATTTACAATCTGTCCATTATAAAATTATACACACAgatataaaaaatcatattttgggTTTTAAATTTGAAGGAGATACGTTACAGTGCGCTCTATGCCCTAATACATATGACCACTTTAAGCTGCTCCAGGAACACATGAATGTCCATcacaataattttaattgtgAAATATGCAGCTCTCCTTTCGTTAATAAAAGAACTCTTGGAAGTCACATGAGGAGACACAAGCAAGGCGAGTTCCCCTGTTCGTTTTGTTCGAAAGTATTTGACACCAATCTCAGAAAGTTATGCCACGAAAGATTCATTCATATTCTTGACCAGAAAACAAATAAGTGTCCACAATGCAATGAGAAATTCGTTTCTTACTCACAGAGAAATGAACATATGGTAAAAGAGCATGGAGCAAAGCCTCTTGTTTTCAAATGTAAGGCCTGTGATAAGACGTTTGCTTCAAAAGAGACGTTGACTCGGCACACCAAACGAGTTCATTTACTTGAAAGGAGAAATGAATGCGAGTACTGCGATATGaaattttttagaaaaaaagatTTGACTATACACATGTTAAAACATACGGGAGACAGAGAGTACAGTTGTGATATATGTTTAAAAGCTTTTGCACGGAAGGATCACTTACAAGAGCATTTGAGAATACACGCAGAAGACAGGAAATATAGATGCAACCTTTGTGGACTACCGTTTGTGCAGAAAGCCAGTTGGAGGAGCCACATGAAGACGCGACATAATAAGCAGATTACCCAAACAGCACATCAGAGATCAGGTAATAATTCTATCAAACTTTTGTTTGTAGGTCTCGGCTGCGATTCAGAAATTAAATTAGAAACTCATGTAAGTAAAATATTAGACGTACTAATTGCACCGAGATCTGCAaactcaaaagaaaaaaatactgattGGACGGTTCCAGTCGCGAAAGAAAGTAGCAATTCGTCGTTCAAAGAAGAAGTCTTTAGAGTTGGACCTCTTAAAACAGACAAAAGAGAGATAGACAAACATTTGCAGAATATTAGAAACATTCTCCTTTATTCTAATGCTACGCCTATCAGAAAACATACAGGGAATGGTTACTTGTGTTGTTTCTGTCCAGAGCTGTTTACCATGCCGAGAGAACTCAAGATACATACCCTACAAAAACAtgacaacaaaacaaaaagcaCTTTCATGAAAGGCTACCCGTTTAATTCCTACGTCGTTAAAATAGATATCACTGGTCTGAAGTGCGAAATATGCGGACAAGATATTGATGGACTAGAGCAACTTATAAACCATTTAAAATCTAAACACAATCACATTTTACATACAgatataaaaaatcatattttgcCTTTTAAATTTGAAGGGGACACGTTCAAGTGCGTACTATGCCCTAAATTCTATGAGCGGTTCAAATTACTCCAAGAACATATGAATGTACACTATAACAATTACAACTGTGAAATCTGCAATTCTCCTTTCGTTAATAAGCGAACTCTTAACGGCCACATGGCGAGACACAAACAGGGAGAGTTCTCTTGTTCATTTTGTTCAAAAGTATTTGGAACAAATGGCAAAAAATTATGCCACGAAAAATTTGTACATATAGGAGATCATAGAAGAAATAAATGTCCACATTGCTTTCAAAAGTTTACGTCTTATGCTAAGAAAAATGAACATATGGTGAATGAGCATGGTGCAGACCCTCGAGTCCTCAAATGTATGGCCTGTGACAAGACGTTCACAAGAAGAGACAGATTGACGCGACACACTAAACGGGATCACTTGCTCGAAAGAAAAAATGAATGCGAACACTGTGACATGAAATTTTATGGAAAGAAAGAATTGAATTTGCATATGTTGAAACATACAGGTGAAAAACAGTACAAGTGCGAAGTCTGTTTCAAAGCTTTTGGACGGAAACATACTTTAAGAGAGCATTTGAGAATACATGCGGATGATAGGAGATTTAAATGTGATCAGTGTGGACAAGCGTTTGTCCAAAAATGCAGCTGGAAGAACCACATGAAATCTAGACATGATGAGTTGGTATGA
- Protein Sequence
- MDKHLQNIRNILFYSNATPIRKQTGNGYLCGFCSEEFILPKDLKTHTLQTHDNETKSSFMKGCIMFDYIVKLDITGLQCEICDQNIDGLKSLMNHLQSVHYKIIHTDIKNHILGFKFEGDTLQCALCPNTYDHFKLLQEHMNVHHNNFNCEICSSPFVNKRTLGSHMRRHKQGEFPCSFCSKVFDTNLRKLCHERFIHILDQKTNKCPQCNEKFVSYSQRNEHMVKEHGAKPLVFKCKACDKTFASKETLTRHTKRVHLLERRNECEYCDMKFFRKKDLTIHMLKHTGDREYSCDICLKAFARKDHLQEHLRIHAEDRKYRCNLCGLPFVQKASWRSHMKTRHNKQITQTAHQRSGNNSIKLLFVGLGCDSEIKLETHVSKILDVLIAPRSANSKEKNTDWTVPVAKESSNSSFKEEVFRVGPLKTDKREIDKHLQNIRNILLYSNATPIRKHTGNGYLCCFCPELFTMPRELKIHTLQKHDNKTKSTFMKGYPFNSYVVKIDITGLKCEICGQDIDGLEQLINHLKSKHNHILHTDIKNHILPFKFEGDTFKCVLCPKFYERFKLLQEHMNVHYNNYNCEICNSPFVNKRTLNGHMARHKQGEFSCSFCSKVFGTNGKKLCHEKFVHIGDHRRNKCPHCFQKFTSYAKKNEHMVNEHGADPRVLKCMACDKTFTRRDRLTRHTKRDHLLERKNECEHCDMKFYGKKELNLHMLKHTGEKQYKCEVCFKAFGRKHTLREHLRIHADDRRFKCDQCGQAFVQKCSWKNHMKSRHDELV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -