Snon012668.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010000666.1:17987-18709[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-08 1.6e-05 26.1 0.0 5 42 19 56 16 58 0.93
Sequence Information
- Coding Sequence
- atgcCAAATACATAcaaccggaagatgcagcaacAGACATGGGACTCTAAATCAATGAAAAATGCTATAAGAGCTCTAAGAAACCAAGAAATGGTTTACCTCAAGGCTAGCGAAGTATTCGATGTTCCTCAATCAACGCTCAAAAGATTTGTAAAAGGAATAAATAAAgttgttgaaaataaaaaaagtattggTTTAGCCGTTGCCGTTGGTCTTGCCGCCCAACTTTCAGTCCGGAGCAAGTACAAGAATTGCAAACTCTTTGGCGAAGCTTACAGTGAGGCAGCCCAACGGTCTATTTCAGTCAATGGTTTTCGTAAATGTGGAATAGAGCCAATGGATCGTCACGCCTTTAAAGATCCTGACTTTTTAGCTGCAGACAACAACAGATATGGCTCTTGCTGA
- Protein Sequence
- MPNTYNRKMQQQTWDSKSMKNAIRALRNQEMVYLKASEVFDVPQSTLKRFVKGINKVVENKKSIGLAVAVGLAAQLSVRSKYKNCKLFGEAYSEAAQRSISVNGFRKCGIEPMDRHAFKDPDFLAADNNRYGSC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01340007; iTF_01340017; iTF_01340018;
- 90% Identity
- iTF_01340007; iTF_01340017; iTF_01340018;
- 80% Identity
- iTF_01340017; iTF_01340018;