Snon001602.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010000072.1:536788-570854[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 9e-09 36.5 0.0 4 39 430 466 427 470 0.90 2 4 2.6e-10 1.3e-07 32.8 0.3 2 39 482 519 481 523 0.92 3 4 1.2e-13 5.9e-11 43.5 0.0 2 45 537 581 536 581 0.96 4 4 4.5e-17 2.2e-14 54.5 0.0 1 42 588 630 588 632 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTTCGATACTTATACCTGATGGTTCTGCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCGGTGTGTGTCAAGCAGGAGCGAGCCGACTCACCACCAACTACCACGCTGGAGACGCTCGAGTCAGCGCCACATAATGCCAAGAGCACGTCCCTGCTGGATCGCCACATGGACTTCATGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCACTTCTGGTTGTCAAGGATGAACCCTCGTCCGAAGGAGACGACACTGACAAGGCTCAAGTGAGACGAAGATGCCTGTTATTGACGTGCTTGGTGGAAGATACATACCGCATCGTTAAGGATTTGGTTTTTCCGGAAGAACTCGAATCGATAGAATACAAAAGTCTACTATCTAAGCTAGACAATCATTTTGCTGCTAAAAAGAGTACATTTGCGGAACGGTACAAGTTTTACAAAGCGGAGCAACGTCCAGAAGAAGATTTGGCTGAATGGGCTTCGCGGGTACGTAATCTCGCACAGTACTGTGGGTTTAAATCGGAACTCGAGTCAGCATTACGTGATCGATTTGTCCTCGGATTGGAAAATATCAAGGAAAAGGAGAAGTTGTTCGCAGAAAGCATAGACGAGCTAACATTGAATCGTGCATTGGAAATAGCGCAAGGGGTAAGATGCGCACGATTAGCTTTGAGGGAGTCGCATAGCAGCGGCGCTGTCGCCGAGCCCACCGCGCTGCCAGCGGAGCCGGCGCATCCCGTGTTCGCATTAAAACAGCGCGGCGCAGTCAGTACGCAACGAGCAGGCGCCGCgggccgcgccgccgccgccgataCCTCGGAAGTTCGGAAGTGCTGCGacCATATTGTAAGCTACAAAGGGACACAATCGCAATCATCCGAGTGCGAGGAGGTAGGCGATTTCCTACCACATGGAACAGTAACTGATCCCGCTGATACGCCCGTGGAACATGACCCCACGGCCCAAGTTGACTTGGAGGGAGAGGAGAGTGATACTTCGTTTTGTTCTGTTCCTGAGACTCCACCTACGATACAGCAAACAGATCAGACGTCAAATAATAATTCCGAAGAAGAAGGGAGAAAGGATTGCGAAAGGATCGATATACCTTTGGTGACTGATCAACCTCAGCAACCAAGCACGGAGCCACTGAAACAACCACATCTTAGTGGTGAAGACACAAGCGACTCCTGCGGACGGCAGGCTTCGCCTACGTCACGACACAGCCCCAAGAGTTGGACTCAACATGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCAGATGAGTCTTACGAAGGCGTCAGCAACCTACGGCATTCCGTCTACCACGCTTTGGCAACGAGCCCACCGACTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGGCTGATCTGCGAGGGGCTCTGCATGCCTTGAGGGCAGGCGCTATTTCTGCTAATAAAGCCAGCAAAGCTTACGGTATTCCCAGCAGTACACTATACAAGATAGCTCGTCGGGAAGGCATACGCCTCTCGGCGCCCTTCAATGCAGCGCCTACCGCATGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCTTCCATCCGCTGCGGCGCCAGCTCTGTGCAACGTGCTGCCACGCAGTATGGGATTCCTACTGGAACGCTATACGGACGGTGCAAGCGAGAGGGAATCGAGCTATCTCGCTCCAATCCCACGCCGTGGTCTGAAGATGCCATGGGTGAAGCACTCGAAGCAGTCAGggTGGGCCAGATGTCCATCAACCAAGCAGCGATCCACTTCAACCTGCCGTACTCCTCGCTCTACGGGAGGTTCAAAAGGTGCAAGTACCAGATGCAGGGTGTCCCTCAAAATCAGCAGCAACCGCAGCAAGAACCCCACAAAATGGAGCAAGAGCAACATCCGCACGAGGTACCACAGTACTACCACCAGGTACCATCCCACCAGGAACCGGATCCGCACACATACGCCCATATGAACGAATATATTCATCAAGACCAGTACTCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPFRYLYLMVLQGSGLEELAPLAPAGPAATPVCVKQERADSPPTTTLETLESAPHNAKSTSLLDRHMDFMNVTEVPDSTDFMPLLVVKDEPSSEGDDTDKAQVRRRCLLLTCLVEDTYRIVKDLVFPEELESIEYKSLLSKLDNHFAAKKSTFAERYKFYKAEQRPEEDLAEWASRVRNLAQYCGFKSELESALRDRFVLGLENIKEKEKLFAESIDELTLNRALEIAQGVRCARLALRESHSSGAVAEPTALPAEPAHPVFALKQRGAVSTQRAGAAGRAAAADTSEVRKCCDHIVSYKGTQSQSSECEEVGDFLPHGTVTDPADTPVEHDPTAQVDLEGEESDTSFCSVPETPPTIQQTDQTSNNNSEEEGRKDCERIDIPLVTDQPQQPSTEPLKQPHLSGEDTSDSCGRQASPTSRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVPQNQQQPQQEPHKMEQEQHPHEVPQYYHQVPSHQEPDPHTYAHMNEYIHQDQYSQYYQGFNSIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -