Sinf046933.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073949.1:2160238-2172847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.05 7.3 8.9 0.1 1 23 209 231 209 231 0.97 2 12 0.0026 0.38 12.9 3.2 1 23 237 260 237 260 0.91 3 12 3.6 5.3e+02 3.0 1.6 1 23 274 296 274 296 0.77 4 12 3.1e-05 0.0045 19.0 1.7 1 23 552 574 552 574 0.98 5 12 0.013 1.9 10.7 4.9 2 23 580 602 579 602 0.97 6 12 0.00016 0.024 16.7 0.9 2 23 611 632 610 632 0.96 7 12 3.5e-05 0.005 18.8 2.0 2 23 636 657 635 657 0.97 8 12 0.067 9.7 8.5 1.4 2 23 671 693 670 693 0.96 9 12 7.8e-06 0.0011 20.8 1.8 1 23 699 721 699 721 0.98 10 12 0.004 0.58 12.3 3.7 2 23 728 749 728 749 0.98 11 12 8.7e-05 0.013 17.5 1.4 1 23 755 778 755 778 0.97 12 12 0.018 2.6 10.3 3.2 1 23 782 805 782 805 0.95
Sequence Information
- Coding Sequence
- ATGGACGAAGAAATCTTTCCGGTGTTATGCCCCAACAAAACTTACTCAAAGTCGATTAAAAAGATAACAGAGTCGAATAATGTGCAAAAGATAGGGACATCGAAAAAGTCCTACGATCCTGGCGTTCCATTGACTACTAAAGTTGCTGTGGAGTATTTGTTGAATGGGAAGCTAAAAACGAATGTATGTCGTTACTGTCTAAAGGTAACGGTAGGATTGTCCGAACTGGACCAGATAATGCACATAGCTGGCACTGGGGTCATATATAAAGTGTCTATAAGAGCAATGATAGCCTGCTTCTACCCTGTGAAGGCCAGACAAGAAGCTAACTTCCCAGAAAAAATATGCCAAAAGTGTTTAGACAGGGCCCTCAATGCTTACCTCTTCACTCAACAATGTGAACAAGCGGAAAGAGCTTTACAGAACTGTTTTGATGACATGAGCGAGAAAATCATAAAACTGGACCCTATTGACAGACCTAAAAAAAGAGGTAGACAAAAACTAAACCCAAACTATAATGTATTGTATGCAGAACATTTTAATGTAATGGATTACGCTGAACCTCTAAGAAACATCATCAATTCTGAAACAGAATCATTGAGTAAGGAACCTGGTTGGAACGAATTTGAATGCAAACGATGCTGGCAAGTTCTTCCAAACTTGGAATCTTTGCTGAATCATGAGCAACAACATCCAAAATACATGTGGTATCATTGCCGATTATGTGGTAAATCATTTGTCAAAATAAACCAGCTGAAGAAACATTTTACCCAAGTCCATATACGAGGAAAAGGGGATAAGGATGAAGTAGATAAGACATTCAAATGTAAAGAATGTGGCAACATAACGGAGACCTATGTAAAACATCTCCAGCATATAGAGAAACATAAGTTTAAAAGTATAATGCAATCTATAGTTGAAAAGAAAACTAaccaattatgtctggtttgtctgaAGAAAAGTACACATTTGGTGGAGATGGATAAAATGATATCCATAAATGGATCTTGCCCAGAATTGGTTGGAGATAAATCATTGTATACAGTGCTAGCCTCAACTTTACCAAATATGAACTACCGACACAGCTTCATTGGGACAAAAATATGCGAACAGTGCCTTGACCATGCCATCActtcatatatttttatacaccAGTTCAATTTCACTAGGGAACGATTAGACCTATGCATTAGTCTCATGTTAGATAActtaagtaaaataataccaGACACTAATATCTTCGTGCAAGTTTCCCCACCGAGCATTGAGGCTCCTCCAGAAGATTCCGACGAGACCTTACTGCTAGATGAAAACGACATTATAGAtgaaagtaaaattaaaattgaagTGCTAGAAGATGAATTTAGACAGAAATCTGAGAGCGAAAGCGATATTGAATCTGCACCTGAAGACAAATTCGAACCAGAACCCCAGCAGATATTCACACCATTGCCACCAgctaaacaatttaaagcagaCCTTATATCAACTCCAGAAATAGAGAATTTAGCTAGAAGCGCCACTAAAACATATGCGAATAAAAAACTTTTGAACGGTTTGCAGCAAAGTTCAAAATATCCTGTCGATGTTTGCAGCGAATTTTTAACGTTTAACAAAAAGAAGACAGTTCGGAATGAAAAGGTTTCGGTAAAATTCACTTGTCCATTGTGCAGTAAACTTTTCATTACACAGTATTTCTTAAAACGACATATTTTGAAACATGTTAACAAAAAAGTCCAATGTAATACTTGTCATGGTGTGTTTAAGTCAAAATTCCATTTGTATGAACATACTAAAATGACACATTTGCTCAAAGAAAGCTTCTATATGTCCTGTAAAGTATGCGGCAGGAATTTCACTGATACAGACAAGTTACAAACACACGAAGAAAAACATAGGATCAAGCCATGTCAACTTTGTAATAAAGTATTTGTAACACAAACTCATTACGAGAATCACATTCAAAGACACGCGGCCAAACTCAaccttttaaaaagaaaacgatCCCAAACATGCAGCTTCTGCGAGAAAGAATGTTCAAACGATAACGAACTCTCTGTACACGTTAATAAGATACATTTACAGATAAAACCTTACAGTTGTGACATGTGTGATAGACAATTTTACACGGAAAGTAATTTGAGAAACCATAAAAAGGTACATAGTATGCCTTCGAAGGAAACATGTGAATTTTGTAGCAAAACTCTTCGAAGTAGAAAACATTTAGTTATTCACGTTAGGAAACATATTGGGGCCAAACCTTTTTGCTGCCAAGTTTGTGGCCAAGCCTTCTACTCGGCTTCTAAAGTCAGAGAACATATGAGAATATACCACGGAGGGCGATTCTGCTGTAGAATTTGTAAATCTATCTTCACAACCAAATATGAACTCAAAGGACATGTGAGTAAAGATCATAATGGCATTTAG
- Protein Sequence
- MDEEIFPVLCPNKTYSKSIKKITESNNVQKIGTSKKSYDPGVPLTTKVAVEYLLNGKLKTNVCRYCLKVTVGLSELDQIMHIAGTGVIYKVSIRAMIACFYPVKARQEANFPEKICQKCLDRALNAYLFTQQCEQAERALQNCFDDMSEKIIKLDPIDRPKKRGRQKLNPNYNVLYAEHFNVMDYAEPLRNIINSETESLSKEPGWNEFECKRCWQVLPNLESLLNHEQQHPKYMWYHCRLCGKSFVKINQLKKHFTQVHIRGKGDKDEVDKTFKCKECGNITETYVKHLQHIEKHKFKSIMQSIVEKKTNQLCLVCLKKSTHLVEMDKMISINGSCPELVGDKSLYTVLASTLPNMNYRHSFIGTKICEQCLDHAITSYIFIHQFNFTRERLDLCISLMLDNLSKIIPDTNIFVQVSPPSIEAPPEDSDETLLLDENDIIDESKIKIEVLEDEFRQKSESESDIESAPEDKFEPEPQQIFTPLPPAKQFKADLISTPEIENLARSATKTYANKKLLNGLQQSSKYPVDVCSEFLTFNKKKTVRNEKVSVKFTCPLCSKLFITQYFLKRHILKHVNKKVQCNTCHGVFKSKFHLYEHTKMTHLLKESFYMSCKVCGRNFTDTDKLQTHEEKHRIKPCQLCNKVFVTQTHYENHIQRHAAKLNLLKRKRSQTCSFCEKECSNDNELSVHVNKIHLQIKPYSCDMCDRQFYTESNLRNHKKVHSMPSKETCEFCSKTLRSRKHLVIHVRKHIGAKPFCCQVCGQAFYSASKVREHMRIYHGGRFCCRICKSIFTTKYELKGHVSKDHNGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- -
- 80% Identity
- -