Sinf044636.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073947.1:12693944-12699326[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.089 13 8.1 0.3 2 23 31 53 30 53 0.95 2 18 0.037 5.4 9.3 0.1 3 23 80 101 78 101 0.94 3 18 5.3 7.8e+02 2.5 3.0 2 20 124 142 123 145 0.91 4 18 7.2e-07 0.0001 24.1 3.7 1 23 149 172 149 172 0.96 5 18 1.6 2.3e+02 4.1 0.4 3 20 179 196 178 198 0.89 6 18 0.16 24 7.2 0.1 1 23 205 228 205 228 0.94 7 18 0.0011 0.16 14.1 2.0 1 23 235 258 235 258 0.97 8 18 4.2e-06 0.00061 21.7 0.3 1 23 263 285 263 285 0.98 9 18 3.1e-05 0.0046 18.9 2.6 1 23 291 313 291 313 0.92 10 18 4.5 6.5e+02 2.7 4.0 2 23 325 346 324 347 0.92 11 18 1.1 1.7e+02 4.6 0.9 2 23 374 396 373 396 0.94 12 18 0.5 73 5.7 6.4 1 23 421 443 421 443 0.96 13 18 0.32 46 6.3 3.2 1 21 447 467 447 470 0.95 14 18 0.58 85 5.5 0.2 1 21 475 495 475 496 0.94 15 18 0.065 9.5 8.5 2.5 3 23 504 526 502 526 0.87 16 18 0.00061 0.089 14.9 1.7 1 23 533 556 533 556 0.96 17 18 3.8e-05 0.0056 18.7 0.8 1 20 589 608 589 611 0.94 18 18 0.0004 0.058 15.5 0.9 1 23 617 640 617 640 0.94
Sequence Information
- Coding Sequence
- ATGCGACCGTTGTCCATCGCGCGACGGAACGCAGAGACTATCGTCCTGAACGCCACGGTATACCCCTTCCGACTGCCGGACACAGCCCTCATGTGCGTATATTGCGGTGATAGTTACACCGACGCCACGATCTTTAGACAGCACATGAAGAAAGAACATTTCTCCTTCAAAGTCCGAACTGCTTTTGCTCATATTGCCTACGAGTGCTACCTCAAAATCGACTGCACAGAAATGGCTTGCAGAATCTGCTTTGAATCCTTCGCGAGAATCGACGACATTGCACGACATTTAAACGAGAGACATGATGCCAAAATAAATTTTGACTTCCAGTTAGGGCTACATCCCTACAGATTTTTACAAGACAGACTCATGTGTGGAATATGTGATCTAAACTTTCCCTGTATGCGACAACTCAGTCGTCATATGTCGTGTCATTTTCTGAATTTTACGTGCGACACCTGCGGCAAGTCTTATACGACCAACAGCTCCTTGCAGCATCATATCAGATTCACGCACATAACAGCCGAAAGAATATGCAGAAAATGCAAACAGCAGTTCAGTTCTTTAGAAGCTAAGAGAGAACACACGATCAATTCTCCCGGATGTTGGATGTATCAATGTCTTGTGTGTCTGGAGCGATTCATGACATGGCCCGCCAAGGAACGACATTTAGTATCGGCACATGGGCAATCCAAAAAGTCTTATTCTTGTTCCGAATGCAGTCAAAGCTTCACAACAAGAAATGCGTATAGAGGACACTTTAATACGACCCACGCTGAAGTCAACTTCCCTTGCGCGCAATGCGGACGGAAATTCGCCTCTAAAAGATATTTAGAACAGCATATGTTAGTCCACACAGGCATAAAAACGTTTCATTGTAATGTGTGCTCTAAATCTTTCCCGAGAAAGAAGAATCTTGTTCAGCACATGTGGACACATAGTGATTGCAAGAGACTGCGAGGAAAAGCTATCACTTGTGTCTACTGCTGCGAAGGTTATGAGGACCCCACGCATTTCAGAAGACACTTCGATGTCCACCACCAAGAGTTCACCATCGGCACCGCATTCCACCACATGAGTAGCTTAAAAGAATACCTCAAAGTCGATATCTGTAACCTAAAATGCAGACTGTGCTCCCAATCCTGTGAAAATATTGAAGAGGTCGCTCAGCACTTGAAGGAGACACATGCGGATGTTGCTAAGAAATTAAACCTTGATTTCGATGTGGGTTTGCAACCTTACAAGTTAGTCAACAACAATTATTGCTGTTATCATTGCGGCAAGAAAATGCCCACTCTAATCAAATTGTGTCGTCATACGATCGTGCATTACCAGAGGTTCACTTGTGACACTTGTGGACGCAACTACCTCACACATGAGGCTTTAAAATACCACATTAAGTGCATACATGCAGTTACAAAACATGTGTGTAGAAAGTGCTGGACAGAATATCCTACACTGGAGCAAAAAAAGGCACATGTCAGGGCTTCAAAATCTTGCTGGACCTTCTGCTGCATAGTTTGCGGCGAAAGATTCCAATCTTGGGAACATAAGCAGAAACACTTACAAGCAGAACATGGCTACGAAAAGATAAGCTATAACTGTCCTGATTGTGAAGAAAAATTCACATCTAGAAAGTATTTTTATATGCATTATAAGCTCGCACATACCGATGAAGGATTCCAGTGCGCTTGTTGTGGACTTAAGTTTAATACTCAGAAAAGGTTAGATGATCACTGCCGAGGGCATACAGGAGAAAAACAGTTTATGTGCACTATTTGCTCTAAGAGTTTCATGAGGCAGAACAGCTTAACGCAGCATATGTGGATCCACAGTGAGCACAAGAGATTCGTCTGTATTTTGTGTGATAAGCAGTTTGCACAAAAAATTAGCTTAAAAACACACCTGAAGACCACTCATCCCGATGTTACGATTGACGTTTAA
- Protein Sequence
- MRPLSIARRNAETIVLNATVYPFRLPDTALMCVYCGDSYTDATIFRQHMKKEHFSFKVRTAFAHIAYECYLKIDCTEMACRICFESFARIDDIARHLNERHDAKINFDFQLGLHPYRFLQDRLMCGICDLNFPCMRQLSRHMSCHFLNFTCDTCGKSYTTNSSLQHHIRFTHITAERICRKCKQQFSSLEAKREHTINSPGCWMYQCLVCLERFMTWPAKERHLVSAHGQSKKSYSCSECSQSFTTRNAYRGHFNTTHAEVNFPCAQCGRKFASKRYLEQHMLVHTGIKTFHCNVCSKSFPRKKNLVQHMWTHSDCKRLRGKAITCVYCCEGYEDPTHFRRHFDVHHQEFTIGTAFHHMSSLKEYLKVDICNLKCRLCSQSCENIEEVAQHLKETHADVAKKLNLDFDVGLQPYKLVNNNYCCYHCGKKMPTLIKLCRHTIVHYQRFTCDTCGRNYLTHEALKYHIKCIHAVTKHVCRKCWTEYPTLEQKKAHVRASKSCWTFCCIVCGERFQSWEHKQKHLQAEHGYEKISYNCPDCEEKFTSRKYFYMHYKLAHTDEGFQCACCGLKFNTQKRLDDHCRGHTGEKQFMCTICSKSFMRQNSLTQHMWIHSEHKRFVCILCDKQFAQKISLKTHLKTTHPDVTIDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445450;
- 90% Identity
- -
- 80% Identity
- -