Sinf044733.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073947.1:14865103-14882073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.26 38 6.6 0.7 1 23 238 260 238 260 0.94 2 16 5.6 8.2e+02 2.4 0.0 2 22 289 309 288 311 0.86 3 16 0.0031 0.46 12.6 0.4 2 23 332 354 331 354 0.94 4 16 0.0044 0.65 12.2 1.7 2 23 360 382 359 382 0.94 5 16 0.0084 1.2 11.3 0.8 1 23 387 410 387 410 0.96 6 16 0.36 52 6.2 0.1 2 23 413 435 412 435 0.92 7 16 0.057 8.3 8.7 2.2 2 21 442 461 441 462 0.93 8 16 0.0084 1.2 11.3 0.3 1 23 521 544 521 544 0.91 9 16 0.013 1.9 10.7 0.2 3 23 573 594 571 594 0.94 10 16 0.012 1.8 10.8 0.1 2 23 617 640 616 640 0.95 11 16 0.00062 0.09 14.9 0.6 3 20 647 664 645 668 0.90 12 16 0.77 1.1e+02 5.1 0.3 1 23 673 696 673 696 0.96 13 16 0.00013 0.018 17.0 0.2 2 23 702 724 702 724 0.96 14 16 7.6e-05 0.011 17.7 4.8 1 23 728 751 728 751 0.97 15 16 0.002 0.29 13.3 0.9 2 23 758 779 757 779 0.96 16 16 0.45 66 5.8 0.7 3 23 787 808 785 808 0.90
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAGATTGTGGTGAAGGAGAGCCCCGGCCTTTGCCGGTGCTGTCTCTCCGAAGGATGTTATAAAGATATGGGCACTGAATATACCTGGATGAATGAAACTGAGGTTTACGCTGATATACTGCTAGAATGCTTCGATATAAGCATAACCCAACACAATGATGGTCCAAATGGTCCAAACCGGCTCATTTGTGAAGTTTGTATCACTCGGTTGCGGGATGCATGCAATTTTAAGAAACAAGTCATGGACTCTGAGAAAAAATTCATTGATATGATGGGCCGTGGGGAATTTAGACCTAAGATGCTCATCTATCAGGCGCAGCTGAAGAATGAAGGTCATACTGCTGCAGTGGAGGATCttaatgatcatgatgatgaagaCATAGAATTTCTTGAGGACGAAATTGATTTTGCTGAAGTCAACCTCAAAGACGACATAACACAGCCATCAGTATCAGACACCACGGTAGTGGCACCGGTCAAAGGCAAACGTGGTCGTCCTCGCAAGAACGCATCAGTCAAGCCGGACAAGCGGGCCAAGTTGGCTAAAGTTGACGAAAAGGCCAAGACGTCTAAAGCTGTAGCTAAAGGTAATAAACCGAGGAAATACAAGGGCAAAGAATCTTCCTCGATGAGAAGGCGACGCAACCTACAAATTATTTTCAACAACACATCTATTATTCCTTTTAAATGGCGTGGAAAGTACCTGTGTTTCTATTGCAGCAAAGATATCGCAGAATATACAGAACTGAGGAAACATACAAAAGCCCATGGCAGCTGTTCCATTAAAGACCATTCTCTCAAAGTCTTAAAAGGAGGCCAGAACatggaaataaaaatagatatatcATTGATCACTTGCGAAGTGTGTGAGGAGACGTTACCGTCTTACGAAGAAATCGTCACTCATTTATTTGACAAACATAAACTTGAATATGATAAAGAAGTAGATATGGCTATAGAAGAGTACAAACTTTCTGATCTCAGTTGCACGGGTTGCGATGAAAAGTTCACGTATTTCGGATACCTAGTTTCCCACGTGAATAATACCCACCCGAAAAACTGTCTCATTTGCGATAACTGTAACCAAAAATTCAACAAAAGGAGAGATCTGTTTTCTCACGTGAAAAATTATCATCGAGAAGGAGGGTACCAGTGCGAGATGTGCCCTCAAATCTTCAACTCTCTGAATATTTTGAGAAAACACCGAAATAACAGGCATTTGACTCGATGCAATATTTGCAATTTGAAACTGCCTTCAGCTGCTTTGAGACAAAAACATATCGACTTAGAACATCCAGACGACGGGTCATTACAATGTGATACCTGTTTCAAAGAATTTCACACGAAACAGGGCCTCAAAATGCATTCAAGAAAATGTAAAGGAGAAGAGATATTTGGGATCGCCATTAAAGAAGAAAATATTGCAATGGACTTGGATCTAAACTACGAGGATCAAACCAAAAAACCTTGCGTTAAACAAATCAGAGAAAACATAGTTATAGTCATAAACATGTCTACGGCAAtaccttttaatttttataagaaTAAGTTCAATTGTTTCTACTGTTCCAAAGATTTTGCCGATTCTGATTTGATGAGGGAACATGCGGTCATGGAACATCCTGTGTGCGATGTAAAAGAGAAATGTATTAGGAAGTGTAGGGAATCTGTAGCTTGTGTCAAAATCGATATTTCCTCACTCGCTTGCAAAGTCTGCTTCGAGTCATTGACTGATTTGGATCATTTGATAGATCACTTAATTGTGAAACACGATGCTAAGTACGACAAGTCGATAACAACGTGTCTTCAACCTTATAGGCTGATTAAAGACAATATGGTCTGCCCATACTGTCCAGGCGAGGTATTCCGCTTCTTCGGAACTCTTCTTAAACATATGAAcatcaaacatacaaacaacaaCATCATTTGCGTTTACTGTGGCCAAACATTCCGTAGGGATCAAAATTTACGTGTTCACATTTGGCGTCATCACAGAGCTGGGCGTTTCAAATGTACAGTTTGCGCTGCTGAGTGTAATATACCATCTCGTCTGTACATGCATATGGCTCGAGCACACGGCGTTAAAGCTGCTAAATGTCCCAAATGCCCCGAGTCTTTCGCTACGCAATACGAAAGGCAGAAACATCTGATTATCGCCCACAACACTGGCCACAAATGTTCTTATTGTGGAAAACTTTTTACAAGAAACTCCTTTATGAGTAACCATATAAGAAGAACGCACATGAAAGAGAAGAGTATAGAATGTAATGTTTGCTATACAAAATTCTTTAACACTGTCCTTTTAAAGAGGCATATGGTGAAACATAGCGGGCAAAAGAAGTATGGTTGTGATATATGCGGGGAGAGGTTTTATTGGCGGAAGACCATGAAGACTCATAAAGATAGGTTGCACAGTAAACAGCTTTATCCTGTACCCATGTAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDMGTEYTWMNETEVYADILLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYQAQLKNEGHTAAVEDLNDHDDEDIEFLEDEIDFAEVNLKDDITQPSVSDTTVVAPVKGKRGRPRKNASVKPDKRAKLAKVDEKAKTSKAVAKGNKPRKYKGKESSSMRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRKHTKAHGSCSIKDHSLKVLKGGQNMEIKIDISLITCEVCEETLPSYEEIVTHLFDKHKLEYDKEVDMAIEEYKLSDLSCTGCDEKFTYFGYLVSHVNNTHPKNCLICDNCNQKFNKRRDLFSHVKNYHREGGYQCEMCPQIFNSLNILRKHRNNRHLTRCNICNLKLPSAALRQKHIDLEHPDDGSLQCDTCFKEFHTKQGLKMHSRKCKGEEIFGIAIKEENIAMDLDLNYEDQTKKPCVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHAVMEHPVCDVKEKCIRKCRESVACVKIDISSLACKVCFESLTDLDHLIDHLIVKHDAKYDKSITTCLQPYRLIKDNMVCPYCPGEVFRFFGTLLKHMNIKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTVCAAECNIPSRLYMHMARAHGVKAAKCPKCPESFATQYERQKHLIIAHNTGHKCSYCGKLFTRNSFMSNHIRRTHMKEKSIECNVCYTKFFNTVLLKRHMVKHSGQKKYGCDICGERFYWRKTMKTHKDRLHSKQLYPVPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00071771;
- 90% Identity
- iTF_00375619;
- 80% Identity
- -