Sinf001680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sesamia inferens
Gene Symbol
-
Assembly
GCA_037179545.1
Location
CM073921.1:35517246-35539188[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00086 0.13 14.4 4.9 1 23 378 400 378 400 0.98
2 11 9.8e-05 0.014 17.4 1.5 1 23 406 428 406 428 0.98
3 11 0.00011 0.016 17.2 1.7 1 23 434 457 434 457 0.96
4 11 0.047 6.9 8.9 3.3 1 21 463 483 463 485 0.95
5 11 0.0011 0.16 14.1 3.8 1 23 491 513 491 513 0.99
6 11 9.1e-06 0.0013 20.6 5.0 1 23 519 541 519 541 0.98
7 11 0.0052 0.75 12.0 0.9 1 23 549 572 549 572 0.97
8 11 0.028 4.1 9.7 4.3 2 23 579 600 578 600 0.96
9 11 5e-05 0.0074 18.3 2.8 1 23 606 628 606 628 0.99
10 11 5.6e-06 0.00082 21.3 1.6 1 23 634 657 634 657 0.96
11 11 4.8e-05 0.007 18.4 6.0 1 23 671 693 671 693 0.97

Sequence Information

Coding Sequence
ATGCGCCCGAGATACGTATCAGTGCAAAGAGCGCTGACCTCTTGCACTGGCCGTCCGTCTAACTTCTACCTACcttGGCCGCCAGGCCTACCTGTCCCAATTAAAGACGTACCTCTGGAAGAGTCGACCAACCAGGAACACCTGGTAAGTGTCGCGGACCCAGAGCACAACACCTTTTGCCAAGCTTTTTGGCACGAAAATCGGACTAGCCTGTCAAGTACAAACAACGAACAGGACTCACTCCCGGACCCGGTCATTCAGAGTAAAGATTCTTGGAACGTGCCCGCGAGCCAGGCGAGCCTGGAAAGTCCAAGCAGCGTGGCAGGCCCAAACCAGAACACAGAATCTACTAAACCCTATTTGGTAATTACGCCTCAGGGCGATATAGTTGAACAAGAGTACACACCTATTAAGAAGAGCAAtcatataaaagaaaatatcttgtTTGCTccaattaagaaaatcattaaagAAACCTCGGAAAGCCAAGACTCCCTAGCTAGTCGAGAGACACAAATTTTAGCAGAGGAGATAAGCCAGGAGAGCCTGGCCAATCAAGATTGCGCGGAAAAAGACAACCTGAAAGAAGATAAGGAAAGTTTGGCAGAAAAACCAACCATGCCGCTTCCAGATAATAACGAGAAGAACAAGCAAACATATCAAGGATCGGTCATTACAGTCAATGCCGCCACTGATGATGACGGCTTGCCGGCGGGGATGGTAGAGTACTACGTAGACCAAGATGGCAAGTACTACTACCAGTCAGCAGTAGAAGGAGAAGAAGTAGACATGGAGAATTCTGAAGACAACCATGAAATTGAGGAGGCGATTGCTGAGGAGTCTGAACCGACCCTGACCGATCAAGAAGAAACCTACCAGACGGTCACGTTGGTCCCTTCAGAGACCAATGGGGAGGTTAGCTACGTGCTCGTGGTACAAGACGAGGCCAAGGGGGTCGTCAACATTGATCTCAAGATGGACCAGTCCGAAGCTGAGGAGAAAGGCAACGATGACGTGTATACCTTTGAAGACGAAGAGGCCGGCGAGGAAGAGGAGGAAGAGGAGGAGGATGTTCCTGATGGCAGGCCCAAGGCCCCGCAGAAGCGCAACCTGGCGCACATGCGTCCTAACTACAACTGCAACTTCTGCGACTACACCAGTCATCGCAGGTACCTTCTGCTGCGTCACATGAGGTCGCACTCGGAGGACCGACCGCACAAGTGTACCGTGTGCGAGCGCGGCTTCAAGACAATGGCTTCGCTGCAGAACCACGTCAACATGCATAACGGCATCAAGCCGCACGTCTGCAAGTACTGCAACAGCCCTTTCACCACCTCGGGCGAGCTGGTACGCCATGTGCGTTACAAGCACACGCACGAGAAGCCGCATAAGTGCACGGAGTGCGACTACGCCTCCGTCGAGCTATCCAAGCTGCGTCGCCATGTCCGCTGCCACACTGGCGAGAGACCCTACCAGTGCCAGCACTGCACCTACGCATCCCCGGATACGTTCAAGCTGAAGCGTCACCTGCGCACGCATACCGGCGAGAAGCCCTACAAATGTGAACACTGCAACATGTGTTTCACACAGTCAAACTCGCTGAAGGCTCACCAGCTCATCCACAACGTATCCGAGAAGCCGGTGTACTCTTGCGAGCTGTGCCCGGCCAAGTGTGGCCGTAAGACAGACTTGCGGATCCACGTGCAAAAGTTGCATACTTCTGACAAGCCGCTGAAGTGCCGTCGCTGTGGCAAGTCCTTCCCTGACCGCTACTCGTGCAAGGTGCACAACAAGACTCACGAGGGAGAGAAGTGCTACAAGTGCGACTTGTGCCCATACGCGTCGACCACGCAGCGCCATCTCAAGACGCACATGCTGAAGCACACTGATGAGAAGCCATTCGTCTGCGACCTTTGTGATCAGTCATTCAGGCAGAAGCAGCTGCTCCGTCGCCACCAGAACTTGTACCACAACCCCAACTATGTGCCCAAGCCGCCTAAGGAGAAGACGCACTCTTGCCACGAGTGCCACCGCATGTTCGCCCACAAGGGCAACCTGATCCGCCACTTGGCTGTGCATGACCCAGAGTCTGGACACCACGAGCGCGCGCTCGCCCTTAAGATTGGGCGTCAGAGGAAGGTGCGATTCGTTGATGGACAGCCTATGTCTAACCTTCGCGTCCTGGATTCTGCCGACGCTGAGAACATGATTAAGCTCGGTCTCACCAAGAACGACCTGAAGCGCGGCGAGCTCGTGACTGTGGGCGACGGCGACGGCCAGCAATATGTAGTGCTGGAGGTTATTCAACTGGAGGACGGTACTGAGCAACAAGTCGCCGTCGTTGCTCCGGAGTACAACATGGATGAGGAAGAAGCCGAAGAGGATGAGGAAGAAGAGGAAGaggaggaagaagaagaagaggaaggtGAGGACAGGAGCTTTATCGTGAAGGAGCCCGCTGTCGCTTCCACTAACATCAAACTCGAGAAGGAGGTCGACACTTGCTTCGGATTCGATGATGAGGAAGAAGAGGATCCTGAAGATGAAAACTACACGGACAAAGTTGTGCTGAACCTAGTTTAG
Protein Sequence
MRPRYVSVQRALTSCTGRPSNFYLPWPPGLPVPIKDVPLEESTNQEHLVSVADPEHNTFCQAFWHENRTSLSSTNNEQDSLPDPVIQSKDSWNVPASQASLESPSSVAGPNQNTESTKPYLVITPQGDIVEQEYTPIKKSNHIKENILFAPIKKIIKETSESQDSLASRETQILAEEISQESLANQDCAEKDNLKEDKESLAEKPTMPLPDNNEKNKQTYQGSVITVNAATDDDGLPAGMVEYYVDQDGKYYYQSAVEGEEVDMENSEDNHEIEEAIAEESEPTLTDQEETYQTVTLVPSETNGEVSYVLVVQDEAKGVVNIDLKMDQSEAEEKGNDDVYTFEDEEAGEEEEEEEEDVPDGRPKAPQKRNLAHMRPNYNCNFCDYTSHRRYLLLRHMRSHSEDRPHKCTVCERGFKTMASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCQHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHQLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCYKCDLCPYASTTQRHLKTHMLKHTDEKPFVCDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFVDGQPMSNLRVLDSADAENMIKLGLTKNDLKRGELVTVGDGDGQQYVVLEVIQLEDGTEQQVAVVAPEYNMDEEEAEEDEEEEEEEEEEEEEGEDRSFIVKEPAVASTNIKLEKEVDTCFGFDDEEEEDPEDENYTDKVVLNLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00123629;
90% Identity
iTF_01340501;
80% Identity
-