Sinf021865.2
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073933.1:4719033-4751713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.19 13.9 1.2 1 23 270 292 270 292 0.98 2 12 0.0037 0.54 12.4 1.3 2 23 300 321 299 321 0.94 3 12 1.8 2.7e+02 3.9 0.3 1 23 325 347 325 347 0.94 4 12 0.0013 0.19 13.9 1.0 1 23 352 375 352 375 0.98 5 12 0.013 1.9 10.7 0.2 1 23 379 402 379 402 0.94 6 12 0.021 3.1 10.0 0.2 2 20 414 432 414 438 0.93 7 12 0.0021 0.31 13.2 1.8 3 23 448 469 448 469 0.98 8 12 0.00028 0.041 15.9 0.9 1 23 1108 1130 1108 1130 0.97 9 12 5.4e-06 0.00079 21.3 2.0 1 23 1136 1158 1136 1158 0.99 10 12 4.2e-05 0.0061 18.5 0.4 1 23 1164 1186 1164 1186 0.98 11 12 0.00025 0.037 16.1 1.8 1 23 1196 1218 1196 1218 0.96 12 12 2.6e-05 0.0038 19.2 0.4 1 23 1224 1247 1224 1247 0.98
Sequence Information
- Coding Sequence
- aTGGAAGTCGTGAAAGTGTGTCGTATTTGTTCCATAATGGACGTGAAATTACACGACCTGCGGTCATACCCATTAGAATCATATTATGAGTCTGTAATGGGAACCAACCCAATTTATGCCAACTTGCCACCTTTTGCCTGCTATGAGTGTGCAGCACTTGTGAGGAAGTTTTATTTCTTCAGACAGAAATGTTTACGTAATCAGGCTGTACTCCATGGTGCTACAGATGCCTTTGGCAAGGTAAAACCTACAGATGTTAAATCAATTGACAGAAAGGGTCTCCACATTGCCTCTAACCTCACAATAACCGTCTTGCCAAATATTAATGTATTAAAGCCCCTAAAGGATAAAATAAACCAAGAAATAAAACTTGAACCAGGTagcgaggatgatgatgataagtttaAAATTGAAGATCATAACTATGCTTCCTTTAATTCAATGGAACCCTCTATCtccagtgatgatgatgaacctttATCACTTCATAAGGAGAAGAAAAGTCTAAATAAGGATACCGATGATGAGAAGGTGGACTTAAAAGAGGAGTTTGAAGGTCTTGAATTTGCTGTAGGCACAGAAGATTCTGGACATTCAATTGAAGTACCTAAAGTAGTTAGAAAAAAGAAACGTGGggtgaagaaagaaaattttaagCATAAAAAAGAGTTGTTAAACCCATGCTTGGATGGTGATGGCAAATGGAATGATTTTGCACAGTACATCAATGTTATTACTTTGACGTTGGAAGAGCAGAAAGAAGAGATACAGAAACGGAAGGAATCTTCCAACTACTTGAACTCTCCGTTCCAGTGTAATCTGTGCTTTAAAGGATTCATAGATAATGACGCCTGGAATCACCATGTTAGCAAACATGCTGTGAGTGCAGGAAGCATTGAATGTGAAGTCTGTAAGTTTAGATTTAAAACGAAGCGTGCCTATCAGAAACATGCATCCAACCACGAGAAGAAATATGCGTGTAAATCCTGTCCATACATATCTACTAACACGACTCAAGCTAAGCAGCATCAAGGATGGCATAAAGGAGTTACTTTCAAATGCAAATTTTGTGATGAAATATTTACAATATGGACTTCTTACATGAGCCATGTGCGTATCAAACATCCGTCAGAGTTCATATGCGGCTTCTGCGGATACTCATTCATCAGCAAGCTGGGCCTCGCCATGCACAAAACTATGATGCACAAGGATGTCCAAGAGAATGATGAAGAAGGTCCCTACTGCGAAGAATGTGACGTCAAGTTCATATCGATGGAGGCGTACAAAAGACACATGGTCATGTCCACCAAGCACACCCAGACTACAGACTCTATTAAAGGCTGTCGGACTTGTGGCGCGACGTTCGAGAACTCTGAAGAGTTACGACTGCATCATCGTAAGGAACATACGCGGAAGAGACCGAAGAACTACGGGAAGAAACGTTCTAACTTAAGTTGGCCTGCCAAATGCGAACACGTTAGTATGAGATCATCAGAGGTTATACATACCATTTGTTCCCTATATGTAGCTTACCAATTCTCTCTTAGGGATGTTGGGATTTATTCCTTAGCACATTTCACGACGCGTTTTACGCCCGCGGTGTGCGCGGTTGTCTGCGAGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTTTTGAGGCTAAATACCACACTGTGCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGCTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTCCCGCTACAGGCGGTCATCTTGTACCGGCGGCGCGGTCGCGGTGCCGCTACAGGCGGTGATCTTGTACCGGCGGGGCGGCTCGCGGTCCCGCTGCCGCGACGGTTTGCCCCCGCGGGTTCTGCGATCGTGTACAGAAGAGATCCCGAACGCTCGTGAGTATTGGACACATTTCCGCCGAGCACATCCCGACAAGAAGTACCCCATTCAGAAGAACCACATATGTGATATATGCGGGAAGGGTTTCAGAGGTAACGCGTTCCTGGTATACCACAAACGCACGCACTTTGAAGAACGTGCATACAAGTGTTCGCAGTGTGACAAAGCGTTCTTCAATCGAACGAATTTGAACGTTCATGAGAAAACGCACTCAGACAACAGACCATATCCTTGCTCTGTTTGCTTCAAAGCTTTCAAGGGTAAAGGAGCCCTCAACAGGCATTTTCGAGTCCACGAGGAAATGTACTCAGACATCAGGCCCCACCCCTGCTCTGTCTGTGACAAAACTTTCAAGTTTAAAGGAGCTCTAGATAGACACTTTTTAAGCCACACGGGTCAAAAGCCATATGAATGCGAAGTATGTGGTAAAGGATTTTCTCAATCAAATAGTCGGAAACTTCACGTTCGTACGGTACATCTGAAGCAACCTGCGCCTTACGTCAGTCGCAACCGTCTCGAGAGAAGAAAACAAGGGCCTAAAGAAACGCCGCCACAGCAGTTTATATATTGA
- Protein Sequence
- MEVVKVCRICSIMDVKLHDLRSYPLESYYESVMGTNPIYANLPPFACYECAALVRKFYFFRQKCLRNQAVLHGATDAFGKVKPTDVKSIDRKGLHIASNLTITVLPNINVLKPLKDKINQEIKLEPGSEDDDDKFKIEDHNYASFNSMEPSISSDDDEPLSLHKEKKSLNKDTDDEKVDLKEEFEGLEFAVGTEDSGHSIEVPKVVRKKKRGVKKENFKHKKELLNPCLDGDGKWNDFAQYINVITLTLEEQKEEIQKRKESSNYLNSPFQCNLCFKGFIDNDAWNHHVSKHAVSAGSIECEVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGVTFKCKFCDEIFTIWTSYMSHVRIKHPSEFICGFCGYSFISKLGLAMHKTMMHKDVQENDEEGPYCEECDVKFISMEAYKRHMVMSTKHTQTTDSIKGCRTCGATFENSEELRLHHRKEHTRKRPKNYGKKRSNLSWPAKCEHVSMRSSEVIHTICSLYVAYQFSLRDVGIYSLAHFTTRFTPAVCAVVCESRYRRSSCTGGAARGPATGGHLVPAARLAVPLQAVILYRRRGSRSRYRRSSCTGGAARGPATGGHLVPAARLAVPLQAVILYRRRGSRSRYRRSSCTGGAARGPATGGHLVPAARLAVPLQAVILYRRRGSRSRYRRSSCTGGAARGPATGGHLVPAARLAVPLQAVILYRRRGSRSRYRRSSCTGGAARGPATGGHLVPAARLAVPLQAVILYRRRGSRSRYRRSSCTGGAARGPATGGHLVPAARLAVPLQAVILYRRRGSRSRYRRSSCTGGAARGPATGGHLVPAARSRSRYRRSSCTGGAARGPATGGHLVPAARLAVLRLNTTLCGGAARGPATGGHLVPAARSRSRYRRSSCTGGAARGPATGGHLVPAARSRSRYRRSSCTGGAVAVPLQAVILYRRRGSRSRYRRSSCTGGAVAVPLQAVILYRRRGRGPATGGHLVPAARSRSRYRRSSCTGGAVAVPLQAVILYRRRGRGPATGGHLVPAARSRSRYRRSSCTGGAVAVPLQAVILYRRGGSRSRCRDGLPPRVLRSCTEEIPNAREYWTHFRRAHPDKKYPIQKNHICDICGKGFRGNAFLVYHKRTHFEERAYKCSQCDKAFFNRTNLNVHEKTHSDNRPYPCSVCFKAFKGKGALNRHFRVHEEMYSDIRPHPCSVCDKTFKFKGALDRHFLSHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQGPKETPPQQFIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -