Basic Information

Insect: Sesamia inferens
Gene Symbol: -
Assembly: GCA_037179545.1
Location: CM073923.1:18621839-18638933[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00035 0.052 15.6 0.2 2 23 207 229 206 229 0.95

2 11 2.6 3.7e+02 3.5 0.3 6 23 239 256 237 256 0.92

3 11 0.00011 0.017 17.2 0.7 1 19 291 309 291 311 0.93

4 11 0.00042 0.061 15.4 0.9 2 23 348 369 347 369 0.96

5 11 0.00058 0.084 15.0 2.8 1 23 377 399 377 399 0.97

6 11 0.00028 0.042 15.9 2.5 1 23 408 431 408 431 0.97

7 11 0.00027 0.039 16.0 0.2 1 23 437 459 437 459 0.97

8 11 1.6e-06 0.00024 23.0 2.2 1 23 465 487 465 487 0.98

9 11 0.00047 0.068 15.2 1.0 1 23 492 514 492 514 0.98

10 11 3.6e-06 0.00053 21.9 4.2 1 23 520 542 520 542 0.97

11 11 0.00088 0.13 14.4 3.4 2 23 549 571 548 571 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00035	0.052	15.6	0.2	2	23	207	229	206	229	0.95
2	11	2.6	3.7e+02	3.5	0.3	6	23	239	256	237	256	0.92
3	11	0.00011	0.017	17.2	0.7	1	19	291	309	291	311	0.93
4	11	0.00042	0.061	15.4	0.9	2	23	348	369	347	369	0.96
5	11	0.00058	0.084	15.0	2.8	1	23	377	399	377	399	0.97
6	11	0.00028	0.042	15.9	2.5	1	23	408	431	408	431	0.97
7	11	0.00027	0.039	16.0	0.2	1	23	437	459	437	459	0.97
8	11	1.6e-06	0.00024	23.0	2.2	1	23	465	487	465	487	0.98
9	11	0.00047	0.068	15.2	1.0	1	23	492	514	492	514	0.98
10	11	3.6e-06	0.00053	21.9	4.2	1	23	520	542	520	542	0.97
11	11	0.00088	0.13	14.4	3.4	2	23	549	571	548	571	0.95

Sequence Information

Coding Sequence: ATGGCTATGAGTGTGAAAGACTTGTGTAGATTATGTGCAAAAAAACACGAGTTTTCGAAAGATCTATTGGATGAAAGTAATAGAAATGTTCTAAAACTACTTCAAGATTTCATACAAATTATCGTCTTTGAGAACGATACTTTACCAACGAAGATTTGCTTGAATTGTGAAGAAAAAATGGTTTCATTCCAACTATTTGTACTAGAATGTTATAAAGCCCAAGATACACTGAAAAAGATGTATGATGACAATTATGATTCTCTTGATATTAAACTTGAACAAACACAGGCAGTTGTAGATTTTGGAGTCTCTTATATTAAATCTGAGgttaaAGACGAAGTAACTGCAGATGATTTAGTTGGTGCATTGAATAATCAGGCAACTTTATCTGTAATAGATGCCTTCCCTGATAGTCatagtgataataatgatgCTGATATTCAAAATGGTgtagatgataatgatgaagataATGACTATCTTGATGTCATAGCAATAGAAGAATTGAAACCTAAACGTAAACGCatcacaaaaaaagaaattacagaTCAGCAGGCAGAAGAATTTAACCAAATTCTCAAAAAGCCCAATTTGAAAGTGAAAGATTTTGTCAAattgcAGTGTGATTTCTGTGGAGAGAAACTGAAGACATGGAGTGGCTTACGAGTACATTATGCTAAACAGCATAAGAGTGAACCATATGTTTTCTGCTTGTGCGGCTTTGCCGTAAAATCAAAAAGTGTTCTTTACAAACATGTATCAGACCATAAAATAGAAAGTAGAAAATTAAGGAAGGACTTTGAGGAATCTGACACCGAAGGAAAACAAAATTGCAGTTATGCAAGTTTGAATGTTAAAGATTTTATAagGTTTCTATGTCCCCATTGTGACAAGGAGTTTTCCAGTTGGTATAGACTAAAGGCGCATTCTGAGTGTGCTCACAAAGTACCGCCGGTGGTTACTTGTCTCTGTGGCATCACACTTAAATCTAAGTCGGTCATGTACAAGCATGTGCACGATCATAGGAATCCTGATGTTTTGACATGTGACAAGTGTCCCCGAATAACAAAAACTCTATCTGCCTTAAATAAACACAAGTTGCGACATATACCAAAATCAGAGAGAAAGTTCAGTTGCGCTTCATGCGACAAAATATTTCATTCTAAAGATTCATTAAAATCTCACGAAAAGTCGCATATACCGATAGAGGAGCGTAAAATATATCATTGTGACATATGCAACATGAAATTCACAACGCGTTCGTCGGCGACGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGGTATGCGTGCGGCACCAACGGCGAGCTGCGACAACACCGCGCCATACACAGCGATGACAAGCCCTTCGTTTGCAGGAACTGCTCCAAACCtttcaAGACTTATTCGAATTTGAAGACGCACATGGATACTCACGAGGACACTTCGTATGAATGCTACATCTGTCGACGGGTGCTGAATAGTCGCCGCACCCTCCGCAAACATCTGTTGGTACACGAAGACAAGTGCAGGCACGTTTGCTCCTACTGCAATAAGGCGTTCAAGAGGAGACAGACTTTGAAGGTGCATATGTATACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCACCGAGCGCTTCTCGTACGCGTCGACGCTGCGCTCACACCGCCTCCGCTGCCATCCCGACAAGATGGTCGCACAAGCGCACGAAGCCTACCCCCACTACGACATGCAAGGGAATTATATCAAGAATGACGTGCCGCCTGTAAATGTTCCAGTAGCAAAGAACGAAGTTGAGGCTATGTAA
Protein Sequence: MAMSVKDLCRLCAKKHEFSKDLLDESNRNVLKLLQDFIQIIVFENDTLPTKICLNCEEKMVSFQLFVLECYKAQDTLKKMYDDNYDSLDIKLEQTQAVVDFGVSYIKSEVKDEVTADDLVGALNNQATLSVIDAFPDSHSDNNDADIQNGVDDNDEDNDYLDVIAIEELKPKRKRITKKEITDQQAEEFNQILKKPNLKVKDFVKLQCDFCGEKLKTWSGLRVHYAKQHKSEPYVFCLCGFAVKSKSVLYKHVSDHKIESRKLRKDFEESDTEGKQNCSYASLNVKDFIRFLCPHCDKEFSSWYRLKAHSECAHKVPPVVTCLCGITLKSKSVMYKHVHDHRNPDVLTCDKCPRITKTLSALNKHKLRHIPKSERKFSCASCDKIFHSKDSLKSHEKSHIPIEERKIYHCDICNMKFTTRSSATSHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRNCSKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCTERFSYASTLRSHRLRCHPDKMVAQAHEAYPHYDMQGNYIKNDVPPVNVPVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029509;
90% Identity: -
80% Identity: -