Sinf041383.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073945.1:17596547-17598631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.038 5.5 9.2 0.1 5 23 326 344 325 344 0.96 2 12 0.014 2 10.6 0.2 3 23 352 372 350 372 0.94 3 12 1.2 1.7e+02 4.6 0.3 2 23 380 401 379 401 0.91 4 12 3.1e-07 4.6e-05 25.2 1.0 2 23 407 428 407 428 0.98 5 12 0.0031 0.46 12.6 4.3 1 23 434 456 434 456 0.98 6 12 0.00037 0.054 15.6 0.2 1 20 460 479 460 481 0.94 7 12 8.2e-05 0.012 17.6 0.2 1 23 514 537 514 537 0.96 8 12 0.00096 0.14 14.3 0.1 3 23 546 566 545 566 0.99 9 12 3.1e-05 0.0045 19.0 0.4 1 23 577 599 577 599 0.98 10 12 8.3e-05 0.012 17.6 4.5 1 23 605 627 605 627 0.98 11 12 0.0031 0.45 12.7 0.3 3 23 635 655 633 655 0.98 12 12 6.6e-06 0.00097 21.1 0.7 1 23 661 684 661 684 0.96
Sequence Information
- Coding Sequence
- ATGTATGTACCCACCTTAAAGTCAAGATCTTATCAATTCCAGGTCAAGGAAGACGATGGTCTACCGCAAAAGCTGTGCGCGGATTGTTATGCCATCATGAACTCAGCGTACCAATTCCGAAAACAGTGTATCAAAATGGACAGTGAACTTCGTCTACAACTTAATACTGTACTTGATATATCCAAAAGTAATAATCCCACCAAAACTGACGCCAACGGTGACATCGATATCGGGAACGACCCCATGAAGCAACTAGAGGCTATCATCAAACAAGAGCCAACCGATAGCGACGATGATTACTATTACGTTCTGGTTATTGATGACCCAAAAGTTaaggaaaagaaagaaataacagaagtaATTAACATTAAACAAGAAGAATATGATGATGAAGTGGCAAATGCGGGAACTACAACTACTTCTTATACACAAGAACCAACTCAAAGCTCTCAGAGTCAGTTTGAAGACTCAATTGAATCATTCCTCATGTCCAACACCAAAGTCTCCGCTAACGTACCAGCTACTATCTTAGAAAATGAGGAAGAGGGCCAGGAAACTGATGATTTAGAAGGAGTCATGAACATAGATGAAACCCAGAATAGTATGGCTTGTGAACAAAATTTTGCTGTAATGGAAGAGTCGCAAGACAATGAAGGCATTGAAACAATTACTTCTAGTGTTATCAGTGAGCTGCCCAGTTCGAAAAACTTCATCAAAATATTGACCACAACTGACTCTGATGGCACGATCCTGTTAAAAGGTAATGATAAGATCCAATACTTGACTGATTCTCAACTAGTAGCAAATGAAGATGAAGACGGAGACGCATTATCCCAAGAAGTTATATTTTGTGAAGGTGATGACTCTTCCCAGTTCCAAATCCTGAAATATGATGGTTCAGAATTGGTTATAGAATATGCAGATGATAGCCAAATAGCTACAGTACTACAACAAGAAGATGGAACATTCTTATGTGATTGTGGGGAGCAGTTTGAAGACTTGGCCGATTATGAGAAGCATCAGTACAAACACAATCCTGCTGGCGAACATTTGTGTAACTTGTGTGGTAAAGGCTTTGAGTCTGCAGAAATTCTTACTGGGCACATGTTACTTCATAGTTGTACCGGGCTCTTAATCACTTGTCCGTTCTGCAATCAGCTAATTAGACGTAATGCATTAACACAGCACATCAAATATGGTCACAACAACATTAAACCTCGCTGCAATATTTGTTTCAAAACATTTGCCAATCCAAACAACCTGAAGCGTCATATGATGATTCACAGCGGTATCAGAGAGTTTGAATGTGACATTTGTTTCAAGAGATTCCACCAAAAAATTACAATGCAAACACATAGGTTAACTCATATGAACCCATTTGAATGCAACCAGTGTGAACAATCATTTGAGAATAAGGCTGCACTGACCAATCACAAAGAGTCCAATGACTGCTCAAAATCTAAAGTGATAAAGGTCAAGGAAGAATTAATGAAGACTGTTAAGCAAGAAATAACCACCAATCTTGGTAAACTTCTTGGTTATGCTTGTTCACTATGCAAGAAGATGTTTTCAATGGAGTCTGCATTAGAGCAACATATTGAAAGCACACATATTATTGATCCAACAGAATTGTTATGTTCAGAGTGCGGTGAAGTACTACCATCTAAGAAAGATATGCAAACTCACATACTGACTCACAAAAACTTAAAGGTGAAGAATGTAAAAAGGTTTGAATGCAGTATTTGTGGGAAAGGGTGTTCGAGCCAGGCCATGCTTTTAATGCATGAGCGAGTACATACAAATGAGAGGCCTTTCCCGTGCCAACTGTGTTCTTTacgatttaaaacaaaaacacattTACGGACCCATCAGCTTACCCACACACGAGAAAAGAAGTTTGGATGTTCAGTTTGTATGAAGTTTTTTGCCCTCAAAGGGAATTTGGTTGTCCATCTTCGAACACATACAGGAGAGCGACCTTATGTATGCTCGATATGTGGAGAAGCTTTCATAGACTCAAAATATTTGAAGAAACACAAACTTAAGAAACATTCTATAGATAATGTGCCCTGGAATCAGTACTGA
- Protein Sequence
- MYVPTLKSRSYQFQVKEDDGLPQKLCADCYAIMNSAYQFRKQCIKMDSELRLQLNTVLDISKSNNPTKTDANGDIDIGNDPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKVKEKKEITEVINIKQEEYDDEVANAGTTTTSYTQEPTQSSQSQFEDSIESFLMSNTKVSANVPATILENEEEGQETDDLEGVMNIDETQNSMACEQNFAVMEESQDNEGIETITSSVISELPSSKNFIKILTTTDSDGTILLKGNDKIQYLTDSQLVANEDEDGDALSQEVIFCEGDDSSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCNLCGKGFESAEILTGHMLLHSCTGLLITCPFCNQLIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFECNQCEQSFENKAALTNHKESNDCSKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSMESALEQHIESTHIIDPTELLCSECGEVLPSKKDMQTHILTHKNLKVKNVKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHSIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039097;
- 90% Identity
- iTF_00037092;
- 80% Identity
- -