Sinf044722.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073947.1:14740937-14756154[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0039 0.56 12.4 0.1 1 23 96 119 96 119 0.94 2 18 0.25 36 6.7 0.0 2 23 152 174 151 174 0.94 3 18 0.5 74 5.7 4.5 2 23 197 218 196 218 0.96 4 18 5.2e-05 0.0077 18.2 0.4 1 23 222 244 222 244 0.98 5 18 0.7 1e+02 5.3 4.0 1 21 249 269 249 272 0.89 6 18 0.1 15 7.9 1.9 2 23 280 302 280 302 0.93 7 18 7e-05 0.01 17.8 2.1 1 23 309 332 309 332 0.98 8 18 0.0009 0.13 14.3 4.4 1 23 338 360 338 360 0.98 9 18 3.6e-06 0.00053 21.9 1.0 1 23 366 388 366 388 0.99 10 18 0.11 15 7.8 0.9 1 14 394 407 394 410 0.91 11 18 0.004 0.58 12.3 0.5 1 23 478 501 478 501 0.95 12 18 0.0037 0.54 12.4 0.4 1 23 601 623 601 623 0.95 13 18 2.5 3.6e+02 3.5 0.6 1 23 628 651 628 651 0.86 14 18 0.16 23 7.3 1.8 2 23 659 681 658 681 0.95 15 18 0.00062 0.091 14.9 1.6 1 23 688 711 688 711 0.96 16 18 8.3e-05 0.012 17.6 4.8 1 23 717 739 717 739 0.97 17 18 4.2e-06 0.00061 21.7 2.3 1 23 745 767 745 767 0.98 18 18 2.7e-07 4e-05 25.4 0.6 1 23 773 796 773 796 0.96
Sequence Information
- Coding Sequence
- ATGGCTCCATTCAACATTACGTACTTCGACACTAATGAAACTTTATACTTTGACATAGTAGTAAAAGTCGGTTATGCAGAAACAGTGCGCAAGAAAAATGAAATGCAAAATTTAGATCAAGCTGTATTAGTTATCGTAGGACCCGAAAGGAAAAAGAGGGAAAGAACACAGGTAAATAATACCAACAAACCATACCTGAATGAATTGGAGAAACATCGCCACAACGTCAGGCAAATACTACAATGTTCTAACGCTACTCCAATAATGCGTCGCGGAGGCATAGGGTACGTGTGTAGTTACTGCTTCGAAGAATTTCCAGAGGCTATggatctaaaaaaacatacacTCGCTGATCATACATCTAACCCTACTGTATCAGACCCTAGAGTTGGATATTCTTCTAAAACCGCTTCCATGGCTGAATACAACATCAAACTAGACATCACCAACCTCGAGTGTACTGAATGTGCTATAGCCATAGACAGTCTGGAAGATTTACAAATCCATATGCAAGAAGATCATAATAAGGTTTTATATACTGACATTAAAAGTCACATCATACCTTTCAAATTTGAAACAGATAGCCTTACTTGCTGCTTATGTCCCAGTGTCTTCGACAAGTTCAAAAAGCTTCAAGAGCATATGCACTCGCATTACAGGAACTACATTTGTGACGTATGCGATACCGGGTTCGTTACCCAGGGAAGCTTCAGCAGACATCGCAGCACGCACTTAAAAGGAGTCTTCCCATGCAGCTACTGCTCGAAGGTTTTCGATACGATGTTGAAAAAGCGGTCCCATCAGAGATGTAACCATACTCACACCGACGTGCTTAATAGATGCGCATTCTGCAACAAAGGTTTTAAAGATTACCATACAAAGGAATTGCACATGTCTGAAGTCCACGGTCTTAAGACACCCGAATACAAATGCAATGCGTGCGACAGATCTTATACCACCAAGCGTAAACTGAGGATCCATGTAAAAAAGGATCATCTGTTAGAGAGGACGCACAAATGTTTGATCTGTGACATGAGATTCTTTTACCCACACGATGTTAAAAAGCACATGTTAACACACACTGGAGAAAGGGAGTTCCAATGCGAAATATGTTTGAAATCATATGGAAGAAAATCTACTCTTAGTAGTCATATGAGGATTCATAATAATGATAGGCGGTTTGAGTGTAAATTTTGTGGGATGTCCTTTATTCAGAAATATAAACAAGAAAACGTGACTACAACTACGGCCATCAAAATAGAGCTGGAATTAGAAGAAATTGTAGCACCTCAGGAAGAGCATGTGAAAGTAAAATCAGAGAAGGCACCTCGTCCACGCATAAAGCGTCTACTGCACAAGCATCTACACAATCTGAAAATAATCTTGGAATCTACTAACGCTACCATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTACTGCCCGGAAGCGTTCCAAGAACCCATGAATTTGAAAATACACACTTTGACGGAACATCAAAATGCAGAAAAGTTCTATGGCAACATTAAAGCCAATGGACCAGCAAGGTTCTTAGTCAAACTTGACATCACGAACTTGAAATGCATGCTTTGCAGTGTCAATATAGACTCTCTCGGGGATCTATTCGTCCATCTGACAGAGAAACATGAGAAAAACTTCTACACTGATATACAAAATCAAATATTTCCTTTCAAATTCAATACGAAGCAATTGAAATGCTGCCAATGTACTAATGATGCCATTTTCGCCACGTTTAGCGCATTACACGAGCATATGCATAAGCACTACCGGTACTTCATTTGTACCGAGTGTGATGCTGGATTCGTCAATCATGATACGTTATCCAGTCACAAAGTCATCCACACAAAAGGAACCTTCGCTTGCCGATATTGTTCTGTTGTATTCGACAACGTATTCAAGAGAAGAAACCACGAGATGGGCAGCCATAAAAAACCTGGCAAACTAAACAAATGCCATTTTTGCAATGAAGGTTTTAAGGATTATATTACGAAGGAGTTGCATCTTTCTACGGTTCATGGCGTTGCTCCACCGAAACACATCTGCACAGCGTGTAACAGGAGCTTTCCCTCAAATAGTTTTCTTAGCGCACATGTTAGACGCTTCCATCTGATGGAGAAAACTCACAAATGTTCAGAGTGCGACAGGGCGTTCTTCAGAGAAAGCCACCTAATTAAACACAAGCTGAGTCATACAGGGGTTAAGAACTTCATATGTGAAATATGTTCAAAGCATTACGCCAGTAAATCTACTCTGTATCGACATATGAGGATACATAACAATGATAGGCGTTATAAATGTACAATATGTGATCAGGCGTTTGTGCAAAAATCTAGTTTGACTTGGCATATGAAGGGAAAGCATGCAGATGCTGGTTCTACTTGA
- Protein Sequence
- MAPFNITYFDTNETLYFDIVVKVGYAETVRKKNEMQNLDQAVLVIVGPERKKRERTQVNNTNKPYLNELEKHRHNVRQILQCSNATPIMRRGGIGYVCSYCFEEFPEAMDLKKHTLADHTSNPTVSDPRVGYSSKTASMAEYNIKLDITNLECTECAIAIDSLEDLQIHMQEDHNKVLYTDIKSHIIPFKFETDSLTCCLCPSVFDKFKKLQEHMHSHYRNYICDVCDTGFVTQGSFSRHRSTHLKGVFPCSYCSKVFDTMLKKRSHQRCNHTHTDVLNRCAFCNKGFKDYHTKELHMSEVHGLKTPEYKCNACDRSYTTKRKLRIHVKKDHLLERTHKCLICDMRFFYPHDVKKHMLTHTGEREFQCEICLKSYGRKSTLSSHMRIHNNDRRFECKFCGMSFIQKYKQENVTTTTAIKIELELEEIVAPQEEHVKVKSEKAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCPEAFQEPMNLKIHTLTEHQNAEKFYGNIKANGPARFLVKLDITNLKCMLCSVNIDSLGDLFVHLTEKHEKNFYTDIQNQIFPFKFNTKQLKCCQCTNDAIFATFSALHEHMHKHYRYFICTECDAGFVNHDTLSSHKVIHTKGTFACRYCSVVFDNVFKRRNHEMGSHKKPGKLNKCHFCNEGFKDYITKELHLSTVHGVAPPKHICTACNRSFPSNSFLSAHVRRFHLMEKTHKCSECDRAFFRESHLIKHKLSHTGVKNFICEICSKHYASKSTLYRHMRIHNNDRRYKCTICDQAFVQKSSLTWHMKGKHADAGST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -