Sinf028929.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- Zfy1
- Assembly
- GCA_037179545.1
- Location
- CM073936.1:31070570-31081187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.055 8 8.7 3.0 2 23 173 194 172 194 0.96 2 14 0.41 60 6.0 0.1 6 23 206 224 206 224 0.95 3 14 0.22 32 6.8 0.0 2 23 235 257 235 257 0.95 4 14 7.2e-08 1e-05 27.2 1.0 2 23 280 301 280 301 0.97 5 14 1.5e-05 0.0022 19.9 2.6 1 23 307 330 307 330 0.96 6 14 0.0042 0.61 12.3 0.0 1 23 336 358 336 358 0.97 7 14 0.00021 0.031 16.3 3.5 1 23 364 386 364 386 0.98 8 14 0.37 55 6.1 3.6 1 23 506 528 506 528 0.95 9 14 0.00036 0.053 15.6 2.0 2 23 535 557 534 557 0.92 10 14 2.9e-05 0.0042 19.1 2.1 1 23 563 585 563 585 0.98 11 14 1.1e-06 0.00016 23.5 4.4 1 23 591 613 591 613 0.98 12 14 0.00011 0.016 17.3 0.2 1 23 619 641 619 641 0.98 13 14 8.7e-05 0.013 17.5 0.9 1 23 647 669 647 669 0.93 14 14 0.0015 0.23 13.6 4.1 1 23 675 698 675 699 0.95
Sequence Information
- Coding Sequence
- ATGCGCTGCTCTATTGTCAATGACTTCCGCAGTGTTCATGAGAATGATGAGCTACCACTTGTGGTGTGCTACCAGTGTTCGAGCACGCTGCTCGCATGGCATGAGCTGGTCAAGTGTTCAATACAGGCAGATGCAGCCCTGCGTGCAAAGATCTCCAGCCAACAGAAAACAAATCCACCTAATGATACCATTAAGTCAAGTTCAAATGTAGAAGAGGAAGCACAGAGCAAGTTGTTTTACGGGAGTGTCAGGAAGGCTCTTATTGAATTTGATATTGATCTGGATGAAGCTGATACGGAGTTTGTTTGCCAAAAATGTGAGGAGAAGCCAGCGCTGACCACTGTGCACAGTCTCGCAGAACATATGCGACACGACCACTCCCCTGACACCCTTGACAATAGTGTTAATACATTCATTACCAACTATATAACGTTCGAACAAGTGCTAGCAGAGGATTCTGATAGAGAAACACAAACAGACACAAAAGACAAGTCCCAAATAGTTCTGCCTAGCCTGCACTGTCCGTTTTGCTCAAGTGCGTTCTCTTCGGCCACGCGGCTCGTGCACCATCTCAACAAACACGTGGAGGTGAACATGGCGACCGGCGTTACATGCTGCGACCTCGTCTACAGCGACAAGAAATATTTCGTGCAACACTTACAAGAGGCACACGTCGACAGGACAGCCGACGAGTCCGTGCCAGTATGCGTCGGCTGTGGATTCACCGCAGACAATGCCGAAGAAATGAGACAGCATTATAAAAACGCGCACAACGATGTCAAAAGGGCAAAAGAGAAAAATGTAGAGAGTCAAAACAATCAAAAGTACATCCCAGCGGTGTGCCCCGAGTGTAACAAGACGTTCTCCAACAAGTACAACATGTTCGCACACATGCGCAGTCACACACACACCGCGGTGTACCCGTGTGACAAGTGTACCCGAACCTACCGCAACCAAGGGAACCTTACCCATCACAAGAGGCTTGCGCATCAGGGAATACTCAAGTTCATATGCGTCGAGTGCGGGGAGGCCTTCCCCAGTCGGTCAGAGCGCGATATACACGCACGCATACACTCTGGAGAAACGCCCTATAAATGCTCGCACTGCAGCAAGTCGTACCGCGCCAAGAACACGCTTTCACGACACCTCGAGATACACGCAGATATACGCAATTACGAGAGCCCCTGCGATTTGCCCGAGGATCCCTGCAGTGCCTCCTCTGAACTGTCTAAGCTGTCTGATGACGAGCCGCTGGCTACGTTCGCTACCAAAAAGCCCTTGAAACTCTATAATAACTTCTACAGAGCACTCGTGAACTTTAGAGACCATTTTGTTAATGATCAACATCATGAGGATTATCCTGACTTCACCGACTCGAGTGTTTCTGACGATGAAGAGAATGACGTGGACAAGTTCGACGACCTGACGCAGTGCAACATGAGACGAGACAGATTGGACGAGAAGACGAGGCTAGAGCTGAGAGAAGTGCAGAACAAAATCGACAACAAGACGTATTACACGTGTAAGATTTGCAGCAAGAACCTGAGCTCTGCGCACACGTACTTATTCCACAAGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGTCACGTGTGCGGCAAGCAGTTCCGCGCTCCCAACGGACTGCAGCGCCATCTCACGGAGACGCACGAACGTGTGCGCCGGTACAACTGCTCGCTCTGCACCAAGAACTTTGCGAACTCACAGAATCTCAAGCAACACTTTCGGATACACACCGGAGAGAAGCCTTTCGTGTGTTCTCACTGCGGGAAGCGGTTCACTCAGAGTGGTTCGTTACACGTGCATCTGAAGACACATAGTGAACACTTTCCTTATGAGTGCGCGGAGTGCGGGGCTAAGTTCCGACTGCGCTCGGGGCTGGTGCGACACAGACTGAAGCACACGGGCGAGCGGCCGCACGTGTGTGCGACGTGCGGGAAGGGCTTCCGCCAGAGACACGAGCTCACCGCGCACGGCCTCGCGCACAGCGGTGTCGCGCCGCACACCTGTGCGGCGTGTCCGCGTGCCTTCCGCCAGCGGCGCGCGCTGCGGCACCACGTGCGGCGCGCCCACCACGAGCCAGACCTCCACTACCACGGCCCGCCCTACTAG
- Protein Sequence
- MRCSIVNDFRSVHENDELPLVVCYQCSSTLLAWHELVKCSIQADAALRAKISSQQKTNPPNDTIKSSSNVEEEAQSKLFYGSVRKALIEFDIDLDEADTEFVCQKCEEKPALTTVHSLAEHMRHDHSPDTLDNSVNTFITNYITFEQVLAEDSDRETQTDTKDKSQIVLPSLHCPFCSSAFSSATRLVHHLNKHVEVNMATGVTCCDLVYSDKKYFVQHLQEAHVDRTADESVPVCVGCGFTADNAEEMRQHYKNAHNDVKRAKEKNVESQNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTHTAVYPCDKCTRTYRNQGNLTHHKRLAHQGILKFICVECGEAFPSRSERDIHARIHSGETPYKCSHCSKSYRAKNTLSRHLEIHADIRNYESPCDLPEDPCSASSELSKLSDDEPLATFATKKPLKLYNNFYRALVNFRDHFVNDQHHEDYPDFTDSSVSDDEENDVDKFDDLTQCNMRRDRLDEKTRLELREVQNKIDNKTYYTCKICSKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYNCSLCTKNFANSQNLKQHFRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEHFPYECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGKGFRQRHELTAHGLAHSGVAPHTCAACPRAFRQRRALRHHVRRAHHEPDLHYHGPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_01340468;
- 80% Identity
- -