Sinf044643.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073947.1:12718334-12725129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.24 36 6.7 2.1 1 23 120 143 120 143 0.94 2 27 0.2 29 7.0 0.1 1 23 214 236 214 236 0.93 3 27 0.00019 0.027 16.5 0.2 1 23 240 262 240 262 0.98 4 27 0.00055 0.081 15.0 0.5 1 23 267 290 267 290 0.96 5 27 0.014 2 10.6 0.4 2 23 297 319 297 319 0.93 6 27 0.13 19 7.5 6.5 1 23 326 349 326 349 0.96 7 27 0.00077 0.11 14.6 5.3 2 23 356 377 355 377 0.96 8 27 0.00026 0.038 16.0 1.7 1 23 383 405 383 405 0.98 9 27 0.032 4.7 9.5 0.1 1 23 552 575 552 575 0.94 10 27 0.07 10 8.4 0.8 2 23 601 622 600 622 0.96 11 27 0.014 2 10.6 0.3 1 23 644 666 644 666 0.98 12 27 4.3e-05 0.0063 18.5 0.1 1 23 670 692 670 692 0.98 13 27 0.0021 0.3 13.2 1.4 1 23 697 720 697 720 0.93 14 27 8.3e-05 0.012 17.6 0.4 2 23 727 749 727 749 0.97 15 27 0.00014 0.02 16.9 1.2 1 23 756 779 756 779 0.98 16 27 0.0077 1.1 11.4 4.7 1 23 785 807 785 807 0.96 17 27 3.5e-05 0.0052 18.8 2.8 1 23 813 835 813 835 0.97 18 27 0.27 40 6.5 1.4 1 23 887 909 887 909 0.90 19 27 0.062 9 8.6 0.4 2 23 937 959 936 959 0.93 20 27 8.2e-05 0.012 17.6 4.5 2 23 983 1004 982 1004 0.97 21 27 0.066 9.6 8.5 0.3 2 23 1008 1029 1007 1029 0.96 22 27 0.099 14 7.9 2.7 1 23 1034 1057 1034 1057 0.96 23 27 4.9 7.1e+02 2.6 2.8 2 23 1069 1091 1068 1091 0.90 24 27 0.46 67 5.8 0.2 1 23 1097 1120 1097 1120 0.95 25 27 7.5e-07 0.00011 24.0 2.1 2 23 1125 1146 1124 1146 0.97 26 27 0.00044 0.064 15.3 2.1 1 23 1152 1174 1152 1174 0.97 27 27 0.0011 0.17 14.0 2.6 1 23 1180 1203 1180 1203 0.97
Sequence Information
- Coding Sequence
- ATGGGAAATGgATCGGACTCCGAAATACCTGATACGAGGCGAAGAATCATCCCGTTATTCCAAGTATCTTATGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAATAAATTCCGTCAAAAGAATATTAAAGCCTTCTCTTCACCTCCAACAAGAGATTTCTCTCCGTCTCGCAGTCCATCACCTGTTTACTCAAGGAAAGAATCATCGCCTTTTATTGATAGAACACCGACATTATCCGTCCAAACTGTGAAACCTAAGGCGAAGAAAACTCCGGATATTAAGCAGAATGCGTTAGCTGTTTTTGAATTTTCAACCGTCTACCCATTCGTTTATGGCAGCAACAAGTTCAAATGTTTCATTTGCTCGCAACCGTTTTTGGACCTTAATGAATTGAAGCTGCACATGCATTTCTCCCACGCCTTCGCACCTCTTAAGAGACTTGTCAATAATCGAAGAGAGAACGTCTTAAAAGTAGATGTTAGTGATATAACCTGCAAGATTTGTTCTGACAAACCACCCAATCTCATCGAACTGAAGCGCCACCTTAAGGAGGTACACGATAAACCAATGGATTTAGAAATCAAAGACAACATGATCCCGTTCAATCTACAACTTGTGGACGATGCCTATAAATGCGTTATATGTGAACAAAGTTTCATAAAAGTGCGAATTTTAGTTATACATATGAGTGAGCACTTCAATAACTACAGCTGCGAGATATGTGGGTCAGTCTTCATGACTTTACGGCTCTTGAAGAAACATTTAGAAGTCCATGACTCTGGAAACTTTCCTTGCGATCGATGCAATAAGATTTTCAGTACTCCTTATAAACGGACTTTGCATATACGAGGCGTGCACTTAAAGCAGTGCCCTAGAAGATGTCCAATGTGTCCAGAAAAGTTTAATTCTAACTATAAAAGGACTATACACTTGCAAGATGTCCATAATCAGGAGACTAGGGTGCATAAATGCAAGACGTGCGGACGAGGATTTAATCTGAAATATCATTTGGTCTGTCACGTGCGGTCTGTCCATCTCCAGGAGCGGAATCAGCAGTGCGATGTCTGTCACCAAAGGTTTTGTAACAAGGAGTCTTTAAAACGGCACAGGGTTATACATACAGGGGAGAAGAATCATAAATGTGATGTTTGTGGGATGGCGTTCTTGAGGAGAAAGAATTTGAAGGATCATTTGCGGTTACATGATATTAgTATCATCCAGAAATCAAATTCTACGATCACTCTGAAAGACGAAGATGGAACAGAAATTAAACTGACAGTACTCAAACATCCAATTTCTTTACAAAGTCTAGAATATGAAACTGAAGATGTAACCGTCAAGCACAACTACAAAAATAAACGAGAAAAGAAAATTTCCAAAACGAAAGAGGATAAGAAGGGTAACATCAAattagaaaatattgtattgttgAAAGAACCAATATCTATAAATAATGTGGATTGGAAAGACCATAGTGAGCAAGAAAATTCGGTAACATTTAATGTGAAAACTGTACAAGGATTTATCCGCGCACCAACAAGAAAACGAAGCGAAAACGTTGACTATGAGACTTGGAAACAGAATGCTCTGATCATATTTGAAAACTCTTATGTCTATCCATTTATACATGCGGGTAATAAATACAAATGTGTTATCTGCTCAAAGCCTTTTCTAGACGCGAATCTGTTGAAAGAACATACTATAAACGAACATACTGCTAAAGAAATGAAACGagcattaaataatagagttaGAGAGAACAATCTAAAAGTTGACGTCACTTATCTCCAATGCAGGATTTGTTTGCAATCACTTCCTGATCTGCAGCACTTGAAAACGCACTTACAGGAGCATGGCAAAAAAATACAGCCAAATTTGCACGATAATATTATACCTTATAAACTAGGAGGCGAAAATTTCGAATGTCAAGTGTGTGGGGAAAAGTATCTCAAATTACGACTTCTAATCATCCATATGAATAAACATTACAACAATTACAGCTGTGAAATATGCGGTTCTGTATTCATATCACTGCAGTTATTGAAACGACATTTACAGATTCACGAATCAGGCAGCTTCCCTTGCAGCAAATGTGACAAAGTATTCACGAACTCCACGAAAAGATCACTACACTACAAAGGTGTACATCTGAAGCAATACCCACGAAGATGTCCAATTTGTCCCGAAAGATTCAACTCAAATTATCAGAGAACCAAACACTTGCGCGTTGCACATAACCAATCTTCTGGATTGTTCAGATGCGATACTTGTGGACGAGAATACGACTTGAAATACCATCTTCTCGTACACATAAGGTCTGTCCACCTCCAAGAGAGGAATCATGAATGTCCAATGTGTAATTCGAGATTTTTCTCCAAGTATTGCCTTTCGAGGCATATGGTTATACATACGGGGGAGAAGAATTTCAAATGTGAGATTTGTGGGAAGGCTTATGCGAGAAGGAAGAACCTTCGAGACCATTGCAGGTCTCATGAGGTCGGATTATGTGCTATTTGTGGACTGACGGCAATACAACGTACGGGACCAAGGACGAGTATTTGGCAAATGACCATATCAGAGAGACAAAACGCAGCTACATTCTTAGAATATACCACCATCAAGCCTTTCTTTTATCAACAAGcgaattttaaatgtttttactgCAACGAAGTCTTCCCAGAAATACATTCCGTCTTACAACACACCGCATTCCACGTAACTCCAGAAAGATGCTGTTTACTAAAGCAGTATCTAAGAAAAGGAAAGAGAGTTATCAAAGTAGATATATCAGGGCTCAAATGCAGGCTCTGCGAACAAAAATATTCAGATCTTGATGATATTAGAAAACATTTAACGCTAGTGCATAAAAAAGAGTTCAATTCAGCAGGTAATGGATTGATGGCGTATGATTTAAATACGAATAACGGCCAGCTGACTTGCCATAAATGTTCAAAGACTTTTAATTCTTTCTTCCTTCTCAATAGACATATGAATGTGCATTTCAGTGTCGTCTGTGAGACTTGTGGTTTAGGATTCATGTCGCATCAGCGCTTGATAAACCATCGAATAGTGCATCAAACTGGAGTTTATAAATGCGATAAATGCCAGGATGTGTTTCCCACAAAATTAAAACTACGTTACCATTTATTCAAGAAACACGAAGTAACTAATACGAAAAAGATAAAACCATTAAAATGCCCACATTGTTTAGAAAGATTCGCAGAACACTACAGAAAAATGACTCATTTGAAAGAAGTTCACGGAATCTCGTTCACATTTGAATGCAGCGCTTGCAAGGTAGTGTTACCAACGCGAAGAGCTCTGACAGAACACACAACAAAGTTGCACACTCAAAAAATTCAATGTAAAGTTTGTGGAAAGTGCTTCGGAACTAAATCTTTGCTAAAAATGCATATGAGAGGACACACGGGCGAGAGAAACTTCTTCTGCGCAATTTGCCAGAAGGCGTATATGCATGAAAGGACTTTACGACAGCATATGAGAGTGCATGGCCCTGTTTGGAAGTTCACGTGTTCGGAATGTGGAAGCGGGTTTCATAACAGGAATGATTATAATAAGCATATGAAGCAGTGGCATCCACAATGGCAGTTTAAGACTATCGTTAAGAATTTTGGAAGTGAACTTATGAATTGA
- Protein Sequence
- MGNGSDSEIPDTRRRIIPLFQVSYDRSLCRPLGTLIDFNKFRQKNIKAFSSPPTRDFSPSRSPSPVYSRKESSPFIDRTPTLSVQTVKPKAKKTPDIKQNALAVFEFSTVYPFVYGSNKFKCFICSQPFLDLNELKLHMHFSHAFAPLKRLVNNRRENVLKVDVSDITCKICSDKPPNLIELKRHLKEVHDKPMDLEIKDNMIPFNLQLVDDAYKCVICEQSFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKIFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHRVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDISIIQKSNSTITLKDEDGTEIKLTVLKHPISLQSLEYETEDVTVKHNYKNKREKKISKTKEDKKGNIKLENIVLLKEPISINNVDWKDHSEQENSVTFNVKTVQGFIRAPTRKRSENVDYETWKQNALIIFENSYVYPFIHAGNKYKCVICSKPFLDANLLKEHTINEHTAKEMKRALNNRVRENNLKVDVTYLQCRICLQSLPDLQHLKTHLQEHGKKIQPNLHDNIIPYKLGGENFECQVCGEKYLKLRLLIIHMNKHYNNYSCEICGSVFISLQLLKRHLQIHESGSFPCSKCDKVFTNSTKRSLHYKGVHLKQYPRRCPICPERFNSNYQRTKHLRVAHNQSSGLFRCDTCGREYDLKYHLLVHIRSVHLQERNHECPMCNSRFFSKYCLSRHMVIHTGEKNFKCEICGKAYARRKNLRDHCRSHEVGLCAICGLTAIQRTGPRTSIWQMTISERQNAATFLEYTTIKPFFYQQANFKCFYCNEVFPEIHSVLQHTAFHVTPERCCLLKQYLRKGKRVIKVDISGLKCRLCEQKYSDLDDIRKHLTLVHKKEFNSAGNGLMAYDLNTNNGQLTCHKCSKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHQRLINHRIVHQTGVYKCDKCQDVFPTKLKLRYHLFKKHEVTNTKKIKPLKCPHCLERFAEHYRKMTHLKEVHGISFTFECSACKVVLPTRRALTEHTTKLHTQKIQCKVCGKCFGTKSLLKMHMRGHTGERNFFCAICQKAYMHERTLRQHMRVHGPVWKFTCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGSELMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -