Sinf016727.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073930.1:6572698-6573189[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-09 3.6e-07 31.4 0.1 1 38 15 53 15 58 0.93
Sequence Information
- Coding Sequence
- aTGGTTCGAGATTATAAGAGACATACTAATAGAGGAGGGTGGAGTGAAGAACAAATGAAATTAGCCATTCAAGCAGTTTTAGATGGAAAAAATGGTTATAAATCAGCCAGCAAGGCTTATAATGTCCCTCAAACAACACTCGAGCGTAAAGTTAACCAAGCCAGAAAAAGAGAGAATAATATACTAAATGTCAAAGTTCCGTTGGGTCCGATTACAACAGTTTtttcagaagaagaagaacaaatTCTCGTAACTTATTTAAAGGAAATGGAAGGAAGATTGTTTGGTTTGTCAACATCTGAATTACAGAAGTTAGCCTATGAGTTAGCAGTCCGTAACAACAAACAGCATAAATTTAATGAACTCAAGGGAAAGGCCGGTAAAGACTGGCTGCGTGGATTTCTGAACCGTCATCCTGACTTGAGTTTACGCAAGCCAGAAAACACGTCTGCGGCTCGTGCTGCTGGGTTTAATAGAGTGTCTGTTTGGTAA
- Protein Sequence
- MVRDYKRHTNRGGWSEEQMKLAIQAVLDGKNGYKSASKAYNVPQTTLERKVNQARKRENNILNVKVPLGPITTVFSEEEEQILVTYLKEMEGRLFGLSTSELQKLAYELAVRNNKQHKFNELKGKAGKDWLRGFLNRHPDLSLRKPENTSAARAAGFNRVSVW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628226; iTF_00971176; iTF_00782576; iTF_00875238; iTF_00876091; iTF_01430732; iTF_00843473;
- 90% Identity
- iTF_00875238; iTF_00876091;
- 80% Identity
- -