Sinf005688.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- Jrkl
- Assembly
- GCA_037179545.1
- Location
- CM073923.1:34470017-34471903[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-10 1.8e-07 32.4 0.0 2 39 16 53 15 58 0.74
Sequence Information
- Coding Sequence
- ATGCCTAGAAAACGTCAAAGAACCACCGCTAAAGCGGCTTGGACCGAAGAACATCTTCTTGCTGCTAAAACTGCAATTGAAGGAGGTATTTCCATAAGAAAGGCCGCAAAACAATATAACATACCATTTTCTACTTTAAAAGATCgattaaaaaatgacaacatgAACAGCCCAAGACTAGGACGCAAGCCTGTTTTTACCCCGCAGCAAGAAACTGAAATTGCAGAACAAATCAAGTTGCTGGGTTCGTTGTACTATGAACTTAGCATTGCAGATTTACGtaaactagtttataagtatgcTGAACTCAACAATATCAAAAACAATTTTGATCAAAACAGCAAAACGGCTGGATTGGATTGGGTGCGCGCCTTTATGAAACTCAATCCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAGCTTAAATAGAATTTCTGCTTTCAATAAAGAAGAAGTTacacatttttatgaaaaacttgGCGACTTAATGGAAAAACATAAGTTTATTCCCAACAATGTTTACAACGCAGATGAAACCGGTATCACCACGGTGACAGACCCAGGGAAAGTGCTCGCTGAAAAAGGACAAAGAAGAGTTGGTTCTGTAACAAGCGGCGAACGAGGAAGCAACGTTACAGTCATGTGTGCGATGAGTGTAGCTGGAAACTTCATACCGCCCATGTTTATTTTTGCCAGGCAGAGAATGACGTGtttattagaaaaagatggcccAGCTGGAGCATTATACACAAACTCTAAAAATGGTTGGATAAACGAAGATTTATTTATCACTTGGCTCAAACATTTTGCAGCATTTGCTAAACCTACCAAAGAGTCACCTGTGTTATTGATTCTCGACAATCACAGTAGTCACATTTCGCTTCAAGCTTTTAATTTTTGCAAAGAACACTACATCACAATGCTTTCCATTCCTCCACACAGTTCTCACAGAATGCAGCCGCTAGATGTGTCTTTTTATGGGCCGCTGAAAACTGCTTATAGGCATGAATGCACCAGGCACATGAAGACACATTTGATGGCGAAAATAACTCCATACGATGTTGCAGGACTTTTTAATAAAGCATACATACAAGTTGCGAATATAAGTAAAGCAGAATCTGGATTTCGAACCACGGGAATATACCCAATTAACCCAAACGTTTTCACCGATCAAGACTTTTTGGCAGCATCGCTGATGGCACCGGAATCGGAACAAACAACTGAAAACCAAACTTCAAATGTCCAGATTAATGAAGATGTGCGATCTGAAGGTATAAGCATAATTTCAGGACATACATCTCCTCTGCCGGGTCCATCAAACAGGGATCAATGCTCTGAATCCGTTCCAGCAGTTATTTGTAACGAAGATCTTTCTGGTGGCCATACAACTCCGGTATCCTTTACTACAATAGCAAAGACACCAACTGTTGCACCACTTTCTAAGCCAAGGCAAAGACAGCGGAAACAACATGCTGCCATACTGACGGCGACTCCTTTGAAAGTTGTTTTAGAGgagaaagaaaggaaaaaaatagcGAAGCTCAATAAGACAggaaataaatcaaataaagtTACTAAATCAAAACCAAAAAAAGTTGTTAAAGAGAAGCAAAACAAACCAAAGCATCAGAAatcatataaaagaaaaattttacaAGAAAGTTCTTCAGAGAGTGAAGATGAAGAGGATCTTTACGATGATGATAGCGACGACGAAATGAATGTggatgatgataattataatgAGTGTATTATTTGTAAAGAATTCGGTAAAAATAACGAATTATGGTACCGCTGCATTCTCTGTGGTCTGTGGTCTCATGCTATATGTTCAGGATGGGATTCACCAGAAGGATACACTTGTGATTTATGTGaacaaaaataa
- Protein Sequence
- MPRKRQRTTAKAAWTEEHLLAAKTAIEGGISIRKAAKQYNIPFSTLKDRLKNDNMNSPRLGRKPVFTPQQETEIAEQIKLLGSLYYELSIADLRKLVYKYAELNNIKNNFDQNSKTAGLDWVRAFMKLNPSVSIRKAEATSLNRISAFNKEEVTHFYEKLGDLMEKHKFIPNNVYNADETGITTVTDPGKVLAEKGQRRVGSVTSGERGSNVTVMCAMSVAGNFIPPMFIFARQRMTCLLEKDGPAGALYTNSKNGWINEDLFITWLKHFAAFAKPTKESPVLLILDNHSSHISLQAFNFCKEHYITMLSIPPHSSHRMQPLDVSFYGPLKTAYRHECTRHMKTHLMAKITPYDVAGLFNKAYIQVANISKAESGFRTTGIYPINPNVFTDQDFLAASLMAPESEQTTENQTSNVQINEDVRSEGISIISGHTSPLPGPSNRDQCSESVPAVICNEDLSGGHTTPVSFTTIAKTPTVAPLSKPRQRQRKQHAAILTATPLKVVLEEKERKKIAKLNKTGNKSNKVTKSKPKKVVKEKQNKPKHQKSYKRKILQESSSESEDEEDLYDDDSDDEMNVDDDNYNECIICKEFGKNNELWYRCILCGLWSHAICSGWDSPEGYTCDLCEQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338599;
- 90% Identity
- iTF_01338597;
- 80% Identity
- -