Sinf028890.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073936.1:30355705-30357525[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-11 7.2e-09 36.8 0.0 3 38 17 53 15 56 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGTGATTATAAAAGGACGACTAATAGACAATCGTGGGACACGGAAAACATGAAAAAAGCTGTTCAAGCCGTGTTTGATGGAACTATGGGGTACTTCAAAGCTGCTCAAATATATCAGGTGCCGAAATCCACCTTACAAGATCGCGTTAATAAATTCCGACAAAATAATGATTTAAACAAATCAACTCTTAAAGGCCTGGGACGTTTTAGGCCAACTTTTACATCTACTCAGGAAAAAAGTTTAGTTGACCACATCTTAATTATGGAAAAACGATTGTTTGGTCTCACTTATAAAGATCTTCGACGGTTAGCGTACCAGCTTGCAGAAGCTAATAATATTGCCCATTCTTTTAATACAACTACTAAAGAAGCGGGAGAGGATTGGCTGTCAGGATTTATGAAACGCCACCCACAATTATCACTGCGTGCAGCTGAACCCACGTCCGTAGCAAGGGCAATGGGGTTTAATATGGTCAGTGTTAATAAATTTTTTGATTTGCTTGAGGAACTCATAGATCAACACAAATTTCTACCTACAAAGATATATAACGTTGATGAAACGGGTTTGACGACGGTTCCTAAAAGACAAAGTAGGATAATCGCCTTAAAGGGAAAAAAGCAGGTCGGCCTGGCCAGTTCAGCGGAAAGAGGTCAACTTACTACTGCTGTACTTTGTGTCTCTGCTGCTGGGAATTATATCCCTCCACTCTTGATATTTCCTCGTGTTCGTATGAAGGCAGAACTTTTAGACGGTGCTCCTCCAGGCACAGTTTCAGTTTGTCATCCAAGTGGCTGGATACAAAGCGAAATTTTCGTTGAATGGCTAAACCACTTTATATCGACAGTAAAGCCCAAGAAAGAAGACCCTGTCTTAATGCTACTCGATGGACATTCGACTCACACAAAAAATCTCCCGTTAATAGAAAAAGCGCGAGACAacggaatttttattttaagttttccaCCCCATTGCACACACAGACTGCAGCCCTTAGATGTAAGCATTATGGGTCCTTTAAGTACTTATTATACTCAAGAAGTAAACATGTGGTTACGGAATAATCCTGGTCGGGTTGTAACGCAGTTTCAGCTGGCTAGACTTTTTGGTGCAGCTTATGGCAAAGCGGCTACGATACATAATGCAGTATCTGGATTTTTGAAAACCGGCATTTACCCGACAAATAGACATGTATTCGATGAAACAGATTTTGTTGCGGCTGAAACTACGGATATACATACGTTAACACCTTCAACTTCTACTACAACAGTTACATGGGAGCCCTCAACATCATCTACGCTACTTGCTAATGCGATTCCATCAACCGCTAGTGAACAAATCGACCCGGTTAAATCATCGCCTAATGCGTCTGTCATAAACTTGGTACAATCCGCTTCATCCACCTCTTTAATTGAACCAGCACCGTCAACTTCTATTGCTTTTGATCAAGACTTTGAAGCTGTATCTCCAGCAGATGTAATGCCAATCCCTAGAGTTAGTGTCAGTCAGAAAAGGACAAACATTCGAAGAGGGAAAACAGCTGTCATCACTTCCTCTCCCTACAAAAACGAACTGATTAgctcacaaaataaaataccaaaaCTTAATCTAGGTCAccaaaagaaaactaaaaaacaaacaACTACCAATGGCAACGATAACTGTCTGTACTGTCTTGAGAAATACGGCACTACTCGATTGAATGAAGGTTGGGTCCAATGTATAGAGTGCAAAGGTTGGGCTCATGAAGGCTGCACAGGTTACGATTCAGATGAATTGGATGATTTTGTGTGCATGGGCTGCATAGCTGCACATTGA
- Protein Sequence
- MPRDYKRTTNRQSWDTENMKKAVQAVFDGTMGYFKAAQIYQVPKSTLQDRVNKFRQNNDLNKSTLKGLGRFRPTFTSTQEKSLVDHILIMEKRLFGLTYKDLRRLAYQLAEANNIAHSFNTTTKEAGEDWLSGFMKRHPQLSLRAAEPTSVARAMGFNMVSVNKFFDLLEELIDQHKFLPTKIYNVDETGLTTVPKRQSRIIALKGKKQVGLASSAERGQLTTAVLCVSAAGNYIPPLLIFPRVRMKAELLDGAPPGTVSVCHPSGWIQSEIFVEWLNHFISTVKPKKEDPVLMLLDGHSTHTKNLPLIEKARDNGIFILSFPPHCTHRLQPLDVSIMGPLSTYYTQEVNMWLRNNPGRVVTQFQLARLFGAAYGKAATIHNAVSGFLKTGIYPTNRHVFDETDFVAAETTDIHTLTPSTSTTTVTWEPSTSSTLLANAIPSTASEQIDPVKSSPNASVINLVQSASSTSLIEPAPSTSIAFDQDFEAVSPADVMPIPRVSVSQKRTNIRRGKTAVITSSPYKNELISSQNKIPKLNLGHQKKTKKQTTTNGNDNCLYCLEKYGTTRLNEGWVQCIECKGWAHEGCTGYDSDELDDFVCMGCIAAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01025963;
- 90% Identity
- iTF_01264374;
- 80% Identity
- iTF_01338530;