Sinf001121.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073921.1:24309203-24325071[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00034 0.084 14.2 0.0 3 40 136 169 134 173 0.87 2 4 0.00034 0.084 14.2 0.0 3 40 199 232 197 236 0.87 3 4 0.00034 0.084 14.2 0.0 3 40 262 295 260 299 0.87 4 4 0.00034 0.084 14.2 0.0 3 40 325 358 323 362 0.87
Sequence Information
- Coding Sequence
- ATGAGCATACATCCATCGAACGCGCAAATGGAGACGTTGATCGGATATATGGAGAAGTATCCGGAGTTCGTCAGAAACCGGACGCGAACCGCTACAGGACGTTACAAGACCAAAGTGGAGTGGGAAGAACTGAGCACGATATTGAATTCAATGGAAGGTTTGAAGAAAACCCCAAAGCAATGGTCAAAATTCTGGGCCGATAAGAAGTACCACTTCAAGAAGAAGATGTCATACCGACGCAATGCAGTTGCAGGTCGCCAGAAATTTGGTTTCTATCCCATAAGCCCACCGCTATCCGAACTGGAAAGGAGAATCCTTCATATTGTGGGTTGCGACGAATCATGGTCCGAAATGAAGAGAACTACGCCTACAATGCTGCGAGGAAAGAAGCTTACCTGGTCACCTCGAAAAATGAGGCTCGCTATAGAAGAAGTACAGGTGGGCTCCAAATTACGTAAATATGGAGTACCAGTAATGACACTGCACGACTATGTAAAGAAAGGTTCTGAATATACACCTAGACTAGGATGGAAGCCTGCATTTACTGCTATACAAGAAGCAATGCTGCGAGGAAAGAAGCTTACCTGGTCACCTCGAAAAATGAGGCTCGCTATAGAAGAAGTACAGGTGGGCTCCAAATTACGTAAATATGGAGTACCAGTAATGACACTGCACGACTATGTAAAGAAAGGTTCTGAATATACACCTAGACTAGGATGGAAGCCTGCATTTACTGCTATACAAGAAGCAATGCTGCGAGGAAAGAAGCTTACCTGGTCACCTCGAAAAATGAGGCTCGCTATAGAAGAAGTACAGGTGGGCTCCAAATTACGTAAATATGGAGTACCAGTAATGACACTGCACGACTATGTAAAGAAAGGTTCTGAATATACACCTAGACTAGGATGGAAGCCTGCATTTACTGCTATACAAGAAGCAATGCTGCGAGGAAAGAAGCTTACCTGGTCACCTCGAAAAATGAGGCTCGCTATAGAAGAAGTACAGGTGGGCTCCAAATTACGTAAATATGGAGTACCAGTAATGACACTGCACGACTATGTAAAGAAAGGTTCTGAATATACACCTAGACTAGGATGGAAGCCTGCATTTACTGCTATACAAGAAGCAGTACGCAACGCCCATAGGGATGCTTCAAACTGA
- Protein Sequence
- MSIHPSNAQMETLIGYMEKYPEFVRNRTRTATGRYKTKVEWEELSTILNSMEGLKKTPKQWSKFWADKKYHFKKKMSYRRNAVAGRQKFGFYPISPPLSELERRILHIVGCDESWSEMKRTTPTMLRGKKLTWSPRKMRLAIEEVQVGSKLRKYGVPVMTLHDYVKKGSEYTPRLGWKPAFTAIQEAMLRGKKLTWSPRKMRLAIEEVQVGSKLRKYGVPVMTLHDYVKKGSEYTPRLGWKPAFTAIQEAMLRGKKLTWSPRKMRLAIEEVQVGSKLRKYGVPVMTLHDYVKKGSEYTPRLGWKPAFTAIQEAMLRGKKLTWSPRKMRLAIEEVQVGSKLRKYGVPVMTLHDYVKKGSEYTPRLGWKPAFTAIQEAVRNAHRDASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -