Smon012039.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000036.1:2590912-2621543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.4e-06 0.00042 21.2 3.1 1 23 52 74 52 74 0.98 2 11 2.2e-06 0.00021 22.2 2.4 1 23 81 103 81 103 0.99 3 11 1.1e-05 0.0011 19.9 0.2 1 23 109 131 109 131 0.93 4 11 1.2e-06 0.00012 23.0 0.0 1 23 137 159 137 159 0.98 5 11 1.2e-06 0.00012 22.9 1.6 1 23 165 188 165 188 0.96 6 11 0.0067 0.63 11.2 1.3 1 14 194 207 194 209 0.94 7 11 0.0076 0.72 11.0 1.4 1 14 336 349 336 350 0.94 8 11 0.0067 0.63 11.2 1.3 1 14 388 401 388 403 0.94 9 11 0.054 5.2 8.3 2.0 1 14 446 459 446 460 0.90 10 11 0.0039 0.37 11.9 0.6 5 23 479 497 478 497 0.94 11 11 0.012 1.1 10.4 0.4 1 23 503 527 503 527 0.94
Sequence Information
- Coding Sequence
- ATGAACCCAATAGCAATGTACATAGAGTGCAGTTTGCAGCTCGCGGCAGCTGCTGTCGGAGCACAGCGCTGCACAGCGGCGACATTGAACCCAATAGCAATCTCGCGGCAGCTGCTGTCGGAGCACAGCAACTCGCACAGCGGCGCGCGGCCGCACCGCTGCGCCGTGTGCGGGAAGACCTTCGCCTCCAAGTACACCTACCAGTCGCACCTCAAGACGCATCTGGTCCGACCGCGTCCATTCAAATGCGAACAATGTGGAAAGTCCTTCCTGACGCAGCAGAATTTAAATCAGCACACAAGGACACATTCTGGGATAAAGGACTTCATATGCAAAGTTTGTGGCAAAGCTTTCGGAACTCAACATAACCTGGAAGTGCACGGCGTAGTCCATTCGGGCAATCGGCCGTTCGTTTGCGGCGTTTGTGGTAAGGCGTTCGCGAGACGCGCAGAAGTCAGAGATCATATGAGAATACACACTGGTGAACGTCCGTTCTCGTGCGAGATCTGCGGCGCAAGCTTCACGCAGCGCTCGAACCTGCACTCGCACCGCCGCGCCACGCACCTGGACGACAAGCGCTACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGCGCCACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCGACAAGCGCCACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCACGACAAGCGCCACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCGGGTAACTCGCACGCGACAAGCGCCAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCGGGTAACTCGCACGCACGACAAGCGCTACAAGTGCCAGCAGTGCTAAGCGCTTCAAGCGGCGCGGGTAACTCGCACGCACGACAAGCGCTACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCACGACAAGCGCTACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCACGACAAGCGCTACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCACGACAAGCGCTACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGCGCCACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCACGACAAGCGCCACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTAACTCGCACGCACGACAAGCGCCACAAGTGCCAGCAGTGCCCCAAGCGCTTCAAGCGGCGCAGGTCCGAAGAGAAGTTTACCACCCTCCCACAGAGACGCaccgtgacaaatggtgagaccGTATGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGTTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTGATGTGCGCCGCGGGCTTCATGCGCAAGCAGCTGCTGTACCACCACATGAACACCGCCGGTCATTTGGCGGAGTCCATTGTTGTGAATCAACCGAGAGTCACCAAGGTGGCAGACAATATGAGCGAGGCCACGTCTATTATCTTAGATACAGGGAACGAGAGCACGGAAAAGTTTACAAACTCCATTTTCGAAGCGACCAACAGCCTGCAATTGGAGACAACGGAGAAATCTGTCGGCAAATCTACAATAAATTTAGAGGAAGGCAACGATGAAACACCTCTGCTGACCTTACAAACAGCATCCGAGGACGATAACGCCGCAAAGTTTATCATAACGGACGGCAAGAAGATTATAATCCAAGATGGCAAATCTACAATAAATTTAGAGGAAGGCAACGATGAAACACCTCTGCTGACCTTACAAAACGTCGATGGCGAATTGAAAGAGGGTACAATCATAGACACAATACCGACGGAACTTTTGGATGAAGATTCGAAGCGCGTGCTGCGACTGCTGCCCGTGCGGCTGCCAGGTGGCCGCGGCGGCTGGCTGGCCGTGCACTCCTGA
- Protein Sequence
- MNPIAMYIECSLQLAAAAVGAQRCTAATLNPIAISRQLLSEHSNSHSGARPHRCAVCGKTFASKYTYQSHLKTHLVRPRPFKCEQCGKSFLTQQNLNQHTRTHSGIKDFICKVCGKAFGTQHNLEVHGVVHSGNRPFVCGVCGKAFARRAEVRDHMRIHTGERPFSCEICGASFTQRSNLHSHRRATHLDDKRYKCQQCPKRFKRRSATSASSAPSASSGAGNSHATSATSASSAPSASSGAGNSHARQAPQVPAVPQALQAARVTRTRQAPSASSAPSASSGAGNSHARQALQVPAVLSASSGAGNSHARQALQVPAVPQALQAAQVTRTHDKRYKCQQCPKRFKRRSAPSASSGAGNSHARQALQVPAVPQALQAAQVTRTHDKRYKCQQCPKRFKRRSATSASSAPSASSGAGNSHARQAPQVPAVPQALQAAQVTRTHDKRHKCQQCPKRFKRRRSEEKFTTLPQRRTVTNGETVCGKSFNSRDNRNTHRFVHSDKKPYECVMCAAGFMRKQLLYHHMNTAGHLAESIVVNQPRVTKVADNMSEATSIILDTGNESTEKFTNSIFEATNSLQLETTEKSVGKSTINLEEGNDETPLLTLQTASEDDNAAKFIITDGKKIIIQDGKSTINLEEGNDETPLLTLQNVDGELKEGTIIDTIPTELLDEDSKRVLRLLPVRLPGGRGGWLAVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -