Smon020733.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000120.1:762572-764938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00067 0.064 14.3 6.3 1 23 8 31 8 31 0.95 2 19 0.00038 0.036 15.1 0.3 2 23 37 59 36 59 0.95 3 19 4.2e-06 0.0004 21.3 0.3 2 23 68 90 68 90 0.97 4 19 1.6e-05 0.0015 19.5 4.3 2 23 99 121 98 121 0.95 5 19 1.2e-05 0.0011 19.9 1.6 2 23 129 151 129 151 0.96 6 19 1.3e-06 0.00012 22.9 1.8 2 23 160 182 159 182 0.96 7 19 1.5e-06 0.00015 22.6 2.1 1 23 188 211 188 211 0.98 8 19 0.13 12 7.2 1.2 1 23 219 242 219 242 0.97 9 19 0.019 1.8 9.8 0.5 2 23 265 287 264 287 0.94 10 19 0.0094 0.89 10.7 0.6 1 23 315 338 315 338 0.97 11 19 0.029 2.7 9.2 1.0 2 23 375 397 375 397 0.95 12 19 0.0012 0.11 13.5 3.4 1 23 421 444 421 444 0.96 13 19 5.4e-05 0.0051 17.8 0.5 2 23 451 473 450 473 0.96 14 19 0.00022 0.02 15.9 2.4 2 23 480 502 479 502 0.91 15 19 0.01 0.97 10.6 1.5 1 23 508 531 508 531 0.96 16 19 0.16 15 6.9 7.1 2 23 539 561 539 561 0.95 17 19 0.038 3.6 8.8 0.2 1 23 568 591 568 591 0.93 18 19 0.0023 0.22 12.6 1.1 1 22 598 619 598 621 0.90 19 19 0.00042 0.039 15.0 1.5 3 23 636 657 635 657 0.95
Sequence Information
- Coding Sequence
- ATGGTAAATAATCAAGCTTACTTTGTATGCGATCACTGTTGTCGCACTTTCACCAGGAAATACAACTTGCAGACCCACATCGAGAACTATCACATGAACTCGTCCTGTTACTGTGAGATATGCGACCAGAGGTTCGGCACGCCCGCCGGCCTCCAGTTGCATCTCTCCAGAGGCCACAACCGATACGGCCAGGCATTCCCCGAATGCGATATCTGCGGCCGCATATTCACAAGGAAACAAAACATCACCTCCCATATGCTAACGGTGCATATGGAGGGTGTGCGCCCAGATATAAGATGCCGTTTGTGCAATAAAACATTTACCACGCACAGAAATCTTAAGCGCCACATCAATCAACTGCACAATCCGTACATAAAATATCCCACTTGCGACGAATGTAACAAGTCGTTCAAAGGCAAACACTCACTCATCGCTCACATACAGTCCAACCATAACGTAACTGAGAAAGATCTGATCAAATGTCGCCTATGCGATAAAGTTTACACGAACAAAAGAAATTTGAAGAGGCACATGGAGATGTTTCACGGCGAAAGAGGCAAATTCAGATGCGATATGTGCCCCAAAGTGTATACTTCCAATCAAAGTTTAAAAAGGCACAGAAAAACTATGCACAATCCTAAAAATCAAAGTCAGTTCCAATGTAAATTCTGTTACGAGACAATAATCGGTAAAGATAATTTTGACAATCATGTGAAATCGTATCATAATGAAGATGAAAAAGGCTTGAACGAGGACGACTCCTTTGATTTTCGTACGAAATCCGGAGAGTGGATTTGTAGTAATTGTAATAGCACATTTAAAGAGGAACCACAGTTGCGAAGCCACGTTAAATTGAAACACTCGTTCCAAGATTTCTATGATTATTGCAAGAGATCGCTGTTAAAGTTGACGAAAGACAAAGTAAATACACAAAGGAGTAATTATAGTTGTGAATTCTGCAGAGAAACTTTAAGCAGTATCCTCGATTTGAAAGATCACATGAAATCCAATCACGATGTGGACTATCGCCTATCAAATTGCAATGTGTGCTTTAATAAGTTCTATTGCAAAGAAACTATGTCTGAGCACAAGAAAATATGTCTACCGCCAGCCGATGTTAATTCGTGCAATCGATGCGACAAACTCTTCACTGACATCTCCAGTTTGGAATTTCACACCAGAATTTTTCACCCCCAAAGTCAAATCGCGGATACGCTTATCTCCTCCACTAACATCGAAGAGAGCTCTGATCAAGGATCATATAAATGTGTCCATTGCAATCGCGCATATTACAGTGAGAGATCTTTGAAGAATCACGTGAAGCTAAAACACACCACCGACGAGGCAGTCGAATGCGAGATATGTCAGAAAATTTGCAGCAATAAATACTATCTCGCGTCCCACATCAAAATAGTTCACAGTAACGATTCGTTGTCGAAGTGTCCCTATTGCAGCAAACAGTTCAAATCTAAAAGGAATATCCGTAGGCACGTCGAATTCACACATTTAGGAAAGCAGAGATACAAGTGCATCGAATGCGAGACCCTGTTCAAAGAGAAACGAAGTCTGAGGAAGCACGTTAGGATCAAACATCCGAATTCCGCCACATTCCCGCAGTGTCATATATGTCACAAGAGATTCGAATCTGCTAAGTCCTGCAAAATACATCTGAAGTTACTGCATTCGTTCAACATGAATACGCATCCCTGCGACCGATGCTCCGTCTCGTTCGATTCCATTGAAGcgttaaatatacatttagaaTTGAAACACTTAGCTGAAAACGCCATTTATAAATGCGAGGAGTGTAATTTGGTTTTTAACGGACATGAGAATTTCGCGAAGCACAATGAATTGTCTCatgttactttaataaatagtgTAAAGCAAAAAGTGTTGCCTAGCTGTGTTCTATGCGCCAAGGAGTTCAGCACAAGGAAGACATTGAAGCGTCACATATTGAAGTTCCACGAGGAGTTCGACGTGGATGAGCTGGTCGCTTTTGGTGGGCGTTTGAGTGCTACCAACGTGGATTGCGGAGATTGCGTGAAAAGCCTTAACGACGAATTCAATTTCTACGTGTATCAGGAGATGAAGCACTTGAGGGGATCTGTcattttcaaatgtaaaaaGTGTTTGTCGTCGTATAACGCGTTGGAATATTCGATTCTGAGATATAAACTGAACAATAGGGACGCGTCTAAGAGTAAGCTGATACTGAGCGAGCTGTGCACGGCAGAGATTCGGGATGACGCAGTCACAGCGCAGGGTTGCGCGGTATTGATGGAACCAGAAAGCACTACCTGTGATATTAAGCTGGAACCGCCCGATTTATGCGAAGTTAAGATTGAACCAGTCTCGCCATGA
- Protein Sequence
- MVNNQAYFVCDHCCRTFTRKYNLQTHIENYHMNSSCYCEICDQRFGTPAGLQLHLSRGHNRYGQAFPECDICGRIFTRKQNITSHMLTVHMEGVRPDIRCRLCNKTFTTHRNLKRHINQLHNPYIKYPTCDECNKSFKGKHSLIAHIQSNHNVTEKDLIKCRLCDKVYTNKRNLKRHMEMFHGERGKFRCDMCPKVYTSNQSLKRHRKTMHNPKNQSQFQCKFCYETIIGKDNFDNHVKSYHNEDEKGLNEDDSFDFRTKSGEWICSNCNSTFKEEPQLRSHVKLKHSFQDFYDYCKRSLLKLTKDKVNTQRSNYSCEFCRETLSSILDLKDHMKSNHDVDYRLSNCNVCFNKFYCKETMSEHKKICLPPADVNSCNRCDKLFTDISSLEFHTRIFHPQSQIADTLISSTNIEESSDQGSYKCVHCNRAYYSERSLKNHVKLKHTTDEAVECEICQKICSNKYYLASHIKIVHSNDSLSKCPYCSKQFKSKRNIRRHVEFTHLGKQRYKCIECETLFKEKRSLRKHVRIKHPNSATFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDRCSVSFDSIEALNIHLELKHLAENAIYKCEECNLVFNGHENFAKHNELSHVTLINSVKQKVLPSCVLCAKEFSTRKTLKRHILKFHEEFDVDELVAFGGRLSATNVDCGDCVKSLNDEFNFYVYQEMKHLRGSVIFKCKKCLSSYNALEYSILRYKLNNRDASKSKLILSELCTAEIRDDAVTAQGCAVLMEPESTTCDIKLEPPDLCEVKIEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -