Smon020539.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000118.1:248618-258561[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.023 2.2 9.5 0.8 1 20 42 61 42 67 0.94 2 32 2.3 2.2e+02 3.2 0.1 2 23 91 112 90 112 0.94 3 32 0.0026 0.24 12.5 0.1 2 23 135 156 134 156 0.97 4 32 0.00068 0.064 14.3 1.3 1 23 160 182 160 182 0.96 5 32 0.14 13 7.0 1.5 1 22 187 208 187 210 0.84 6 32 0.59 56 5.1 0.5 1 23 216 239 216 239 0.93 7 32 0.047 4.5 8.5 1.3 2 23 246 268 245 268 0.95 8 32 0.0029 0.27 12.3 1.7 1 23 273 295 273 295 0.97 9 32 1.2e-05 0.0012 19.8 0.2 1 23 301 323 301 323 0.98 10 32 0.13 13 7.1 2.7 2 20 327 345 326 346 0.94 11 32 0.014 1.3 10.2 2.6 1 20 418 437 418 439 0.95 12 32 0.087 8.2 7.7 1.1 2 23 511 532 510 532 0.97 13 32 0.0066 0.63 11.2 0.2 1 23 536 558 536 558 0.95 14 32 0.06 5.7 8.2 1.2 1 21 563 583 563 586 0.74 15 32 0.0073 0.69 11.1 0.9 1 23 592 615 592 615 0.95 16 32 0.00092 0.088 13.9 0.5 1 23 622 645 622 645 0.97 17 32 1.9e-06 0.00018 22.3 0.6 1 23 652 674 652 674 0.97 18 32 5.2e-06 0.00049 21.0 2.1 1 23 680 702 680 702 0.98 19 32 0.0006 0.057 14.5 0.5 2 23 706 728 705 728 0.97 20 32 0.0039 0.37 11.9 0.4 1 23 816 839 816 839 0.94 21 32 0.13 12 7.2 2.3 2 23 866 888 865 888 0.93 22 32 0.22 21 6.4 2.9 1 23 910 932 910 932 0.98 23 32 0.00016 0.015 16.3 0.5 1 23 936 958 936 958 0.97 24 32 0.0039 0.37 11.9 0.1 1 21 992 1012 992 1015 0.90 25 32 0.024 2.3 9.4 3.2 1 23 1022 1045 1022 1045 0.96 26 32 0.038 3.6 8.8 0.3 1 23 1111 1133 1111 1133 0.94 27 32 1 97 4.3 0.2 2 23 1159 1181 1158 1181 0.90 28 32 1.1 1.1e+02 4.2 1.1 1 23 1203 1225 1203 1225 0.94 29 32 0.022 2.1 9.6 8.5 2 21 1230 1249 1229 1251 0.93 30 32 4.4e-05 0.0041 18.1 0.2 1 23 1256 1279 1256 1279 0.95 31 32 0.97 92 4.4 0.7 1 23 1285 1308 1285 1308 0.91 32 32 0.28 27 6.1 0.2 1 23 1314 1337 1314 1337 0.94
Sequence Information
- Coding Sequence
- ATGGGGGTGAAGCCCCGGCTGCTCAGGATCGCAAGAGCAATTACCAAAAATGCCATGAAAAAGAATGCCGGCAACCTGCTGGAGTGCTGGACACTGTGTCCTTTTAAATGGCGACAGGGCAAATTCAAATGCGGCTATTGTAGCCTGGGTTTCGCACAAACAACGGAGTTGAGAGAACACGTTGCGTCTTGCTCTGAGCACCACTCCATTGACGACATTTACCTGGGTTTAAAAGAGACTCATCTGATAAATGTCGATATAACTGACGTTGTTTGTCGTATTTGCTCGTGCCCTTTCCCCGGAGTAGGGGAGATGCGGCAGCACGCCATGCAACACGGTTACGAATTCGACTCCAGTGTCAGAAACAGTATCATACCGTTCATCCTGAACCAAGAAAGCTTGCGTTGCGCCGTTTGCGAAGAGAGCTTCGCCGTCTTTTTCGAACTTTACAAGCACATGAACGTTCACTACGATCGTTTCACTTGCACTACATGCGGAAAAAGCTACATGACTGTTAACCGTTTGAAGAGACACCAGGAGGGGCACGTCGAAGGGTTCTTCCCGTGCGATCTGTGCGGTGAAACGTTCACTGTGCGTACGAAAAGGTACCAGCACAAAGCACACGTGCATTCAAAGGGCCCGAGGTACATGTGCCCGTATTGTAATGATCGCTTCCTTCGTTATGACGATAGAGTGAAGCATCTGCGTGACGCGCACGAGAAGTTGGATCCGGTAAAATGCGAACACTGCGGCTTAATCTTCGAAAACACCAACAAGCGCAGAAACCACGTTCAGTCCGTGCACATGAATACTAAGTTCAAATGCACCCATTGCGAAGCGAGCTTCGGGAGTAAAGCTCGCTTAATGAGTCACTTGGTAAAGCACACCGGCGAGAAGAGGTTCGTTTGTAAGATTTGCGGGAATAAGTATCCAAGGAGCGGTGCCCTTTGGAAACACCTCCGATCCCATGAGGACATGACCTGCAAATTCTGTGACGTCATGTTCAATCGTCGATGCGAGCTCGCGTCGCACGTTTGCCCTGAAAATGGGAGATATCAAGGACAATCGGATAAAGAAACTGTCGTTAAGACAGAGAACGCTGATGGTTTACAATTAGAATTAAACAAATTGAAGGAAAAGCGACGCTATGTCAGGAGCGCGAGGGCCGAGGCGAGGATCATTACAAAGAAAAACGCCAAGTCACTGTTGGAATGTTGGTCCGTGTGCCCGTTCCGGTGGCAGAGGAATCGATTCAAATGCGCCTATTGCGAGGAGAGCTTCATACAGTGTTGTGATCTCAGAAGTCACGTCAGCGACTGCTCCTCCAAGCACAGCGTGAAGGACATTTACAGCAAATTCAAAGAGATGTCCCTTATCAACGTCGACGTGACCGGCGCGTTCTGTCGTCTCTGTAGGTGTCCCTATTCCGGCATCAGTCAGATGCGACAGCACGCTATCCAACACGGATTCGAATTCGATACTTCCCAACCGGACGGCGTCTTACCATTCAGTTTGAATAAAGAGTGCTGGCGTTGCGTCATATGCCACAATATCTTCAACAACTTCCTCAAACTCTACGAGCATATGAACGTTCACTATCAGCATTACATCTGCTCTACATGCGGGAAGGGTTACATGACCGCGCCCCGTTTGAGGAAACACTCCGAGGTTCATATTACCGGGTCGTTTCCGTGCGAGAAATGCGGTAGGGCGTTCACTATGCGAGCAGCTAGAGATCATCACAAAGCCCACGCCCACGCGAAAGGCCCGCGATACGAATGTCCACATTGTAATATACGTTTCAACGGCTACTATGATAGGATGAATCATTTGAATGAAGCGCATAGGGAGAAGGAGGTGTCTTACAACTGTAGCGTCTGCGATTTGACATTCAAGACGAGCGGAAAGCGTGCAATGCACGTCAGAACGGTACACTTACCGGCGCCACGCAATTTCGCGTGCCCGTACTGCGACTGGCTGTTCAAAACCAGTTACGAACTGAAGAGGCACATGGTGAAACACACTGGCGAGAGGAACTTCTGCTGTACGATATGCGGCAAGGCGTATCCGAGGAATCGCGCATTGAGAACGCATTTGAAGACTCACGACGACCTCACGTGCAAGTGGTGCGGTGTTTTGTTCAAGCAGCGGGCGCTGCTGCTGTCGCACACGCGAACGAATCATCCGAACTTGAACGATCTGATGGCGGTCGGTACGGAGAAGATTTCGTGGTCCGCTAGTGCGGAAGCTGTGACGAACGTAAATAAGCGGGTTAGGAAGTTGAAAGAGAACGTAAGCGCGCGACAGATGCGCCGGCGCCGGCGCGCCAACAACCAGCTACCCGAAGAGTCAGAGAGGCGGATCGCGAAAACGATGATGAGACGGAACGCCATGACCCTCATGGAATGTTCCACGGCGTGGGCGTTCCGGTGGTTCCACAGCGCGTTTTTCTGCTCCTATTGCGATCGCAAATTCATTGATACCACACCATTGCGCGAACACGTGGCATCTTTACACCTAAACGCCTCTCCAACCAACCGTATATTTTCGAAGCTCACAGAAAACAATATGGTCAAGATCGACATAACAGATTTACGATGTAGACTGTGCAATTACAAATGCAACACCATCGAAGAGCTCAAAAATCATCTAACGAACGTACACAGGAAGACCGTGAACACGGAATATAGCGACGGGGTCCTACCGTTCAAACTCGATCCGAACGGCTTCCATTGTCAGATTTGCTTCGAATATTTCGCGAGCTTCACGAAAATCAACGAGCACATGAACTCTCACTATCAGAATTACATATGCGACGCGTGCGGGAAGGCTTTCGTCTCCAAATCCAGGTTCAGGACGCACGTGCAGTCACATGAGATCGGGACCTTTCCGTGCGGTCAGTGCGACGAGGTGTTGCAGACACGAGCGGCTCGAATGTGTCACAGACTTAAAGTGCACAGGAAGGGTGTTAGGTACACGTGCCCACGGTGTCCGGAAGTCTTCACCACTTACTACGCGAGAGCGAAGCATTTGGTGGATGGACACGCGCAGCAGGCGAGGGATTACGAATGCACAGCGTGTGGCAAATGCTTCGAAACCAGCTGTAAGCGAGCAGCACACTTCCGTGTCGCGCACAAACCTATCGAGAAACGCTACGAGTGTCCGTATTGTCTATGCTACTTCGTCAgacgAGAAGAAGCCGATACAGCACCTAGTGACAAGGTTAAAGTTAAATGGAAAAGGAAAAAAAGGGTCTTGGAGGATAATGCCAACGCAGCTGTAATATTAGAAAATTCGAACGCTGTTGCGTTTAGGTGGCAACGGGGAAGATTCATGTGTGCCTACTGTCCACGTATATGTCCCGACATCGGACAGCtacgcatacatacatatgaacaCACACACAAGCTCGATGTGTTTAACAATTCTGAAGTGCGCAATTCTTTTCCATTAAAAATCGATATCACCGATCTCTCTTGTGTAGTATGCGAAGAGAGAATCGAgactttgaattatttaaagaagCATTTAACTGACAGACACGGTAAAAAATTCAATCCTGATTATACTGATGGCTTAGTGCCATTCGTGTTAACGGGCAAGGAGTATAAGTGCGTCCATTGTGGTGTTATAATGGAGAGTTTTATGCGTTTGTTTGTGCACATGAATCAACATTATCAGAGCTGCGTGTGCCACACTTGCGGCAAAGGTTTCTCAGGCAAACATAAGCTGCGCGCTCATCAAAAGTGTCACGAAACCGGAGAGTTTGAATGTCCTAAGTGTGGCAGGGTCTTTACGAACAGAGCAAGCAAAAGCAGGCACGTGTCGGTCGCCCACGGGCCCAAGGAGCGATACCGATGCCCGATCTGTGCCGACCGGTTTGAATCTTACCATTCGCGATTGAGACATCTAGACCTTGCACACGGTCGGAAGTGCGAGTATCGCTGCAGTATGTGCCCCTCAGTATTTGGAACTGGGAATTTAAGAAACTCACATATCAGAGATGTGCATAACaggaaaaagaatattaaataa
- Protein Sequence
- MGVKPRLLRIARAITKNAMKKNAGNLLECWTLCPFKWRQGKFKCGYCSLGFAQTTELREHVASCSEHHSIDDIYLGLKETHLINVDITDVVCRICSCPFPGVGEMRQHAMQHGYEFDSSVRNSIIPFILNQESLRCAVCEESFAVFFELYKHMNVHYDRFTCTTCGKSYMTVNRLKRHQEGHVEGFFPCDLCGETFTVRTKRYQHKAHVHSKGPRYMCPYCNDRFLRYDDRVKHLRDAHEKLDPVKCEHCGLIFENTNKRRNHVQSVHMNTKFKCTHCEASFGSKARLMSHLVKHTGEKRFVCKICGNKYPRSGALWKHLRSHEDMTCKFCDVMFNRRCELASHVCPENGRYQGQSDKETVVKTENADGLQLELNKLKEKRRYVRSARAEARIITKKNAKSLLECWSVCPFRWQRNRFKCAYCEESFIQCCDLRSHVSDCSSKHSVKDIYSKFKEMSLINVDVTGAFCRLCRCPYSGISQMRQHAIQHGFEFDTSQPDGVLPFSLNKECWRCVICHNIFNNFLKLYEHMNVHYQHYICSTCGKGYMTAPRLRKHSEVHITGSFPCEKCGRAFTMRAARDHHKAHAHAKGPRYECPHCNIRFNGYYDRMNHLNEAHREKEVSYNCSVCDLTFKTSGKRAMHVRTVHLPAPRNFACPYCDWLFKTSYELKRHMVKHTGERNFCCTICGKAYPRNRALRTHLKTHDDLTCKWCGVLFKQRALLLSHTRTNHPNLNDLMAVGTEKISWSASAEAVTNVNKRVRKLKENVSARQMRRRRRANNQLPEESERRIAKTMMRRNAMTLMECSTAWAFRWFHSAFFCSYCDRKFIDTTPLREHVASLHLNASPTNRIFSKLTENNMVKIDITDLRCRLCNYKCNTIEELKNHLTNVHRKTVNTEYSDGVLPFKLDPNGFHCQICFEYFASFTKINEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGTFPCGQCDEVLQTRAARMCHRLKVHRKGVRYTCPRCPEVFTTYYARAKHLVDGHAQQARDYECTACGKCFETSCKRAAHFRVAHKPIEKRYECPYCLCYFVRREEADTAPSDKVKVKWKRKKRVLEDNANAAVILENSNAVAFRWQRGRFMCAYCPRICPDIGQLRIHTYEHTHKLDVFNNSEVRNSFPLKIDITDLSCVVCEERIETLNYLKKHLTDRHGKKFNPDYTDGLVPFVLTGKEYKCVHCGVIMESFMRLFVHMNQHYQSCVCHTCGKGFSGKHKLRAHQKCHETGEFECPKCGRVFTNRASKSRHVSVAHGPKERYRCPICADRFESYHSRLRHLDLAHGRKCEYRCSMCPSVFGTGNLRNSHIRDVHNRKKNIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -