Smon020595.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000118.1:607819-610939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.01 0.98 10.6 0.4 2 23 7 29 6 29 0.96 2 23 0.33 32 5.8 0.2 2 20 35 53 34 55 0.92 3 23 0.00017 0.016 16.2 2.8 1 23 106 129 106 129 0.94 4 23 5.3 5e+02 2.1 0.1 2 23 157 179 156 179 0.90 5 23 0.032 3.1 9.0 0.3 1 23 201 224 201 224 0.92 6 23 2e-05 0.0019 19.1 4.9 2 23 230 251 230 252 0.94 7 23 0.00013 0.012 16.6 3.5 1 23 257 280 257 280 0.95 8 23 0.0021 0.2 12.7 0.7 2 23 286 308 285 308 0.94 9 23 0.0029 0.27 12.3 3.8 3 23 353 373 351 373 0.97 10 23 0.024 2.3 9.4 0.0 3 23 402 423 400 423 0.94 11 23 0.005 0.47 11.6 1.1 3 23 445 466 443 466 0.95 12 23 0.00014 0.013 16.5 0.3 1 23 471 494 471 494 0.94 13 23 0.012 1.1 10.4 2.6 1 23 499 522 499 522 0.96 14 23 0.01 0.96 10.6 3.1 2 21 525 544 525 547 0.95 15 23 0.043 4.1 8.6 3.2 2 20 554 572 553 574 0.93 16 23 0.022 2.1 9.6 3.1 1 23 629 652 629 652 0.93 17 23 0.57 54 5.1 0.1 2 23 725 748 724 748 0.94 18 23 6.8e-05 0.0065 17.5 0.2 3 23 755 776 754 776 0.94 19 23 0.00054 0.051 14.6 3.8 2 23 781 803 780 803 0.95 20 23 0.00033 0.032 15.3 2.9 1 23 808 831 808 831 0.97 21 23 1.1e-05 0.001 20.0 6.7 1 23 835 858 835 858 0.98 22 23 0.00024 0.023 15.7 0.3 2 23 865 886 864 886 0.96 23 23 0.00032 0.03 15.3 2.1 1 23 892 914 892 914 0.97
Sequence Information
- Coding Sequence
- ATGAACTCCCACGCGTCCACGTGTAATGTTTGCTTTACGAATTTCCCTTCGGCCAATGAAAGGCTTAGGCACATGAAGATAGATCATGTGTCTGATGACCTGCAATGTGGATTCTGCCTTAAGACACTCACAACAAAGCAGGGTTTCCTTCGTCACGCGGCAACGTGTACTCGTATCGATGATAGCGTTAAAATATCAAACTATTCGATAAGATGTGACAAGGAAAAGAAACCTTCTGTTAAGAAGATAAGACATGATTTAGCATATATCCTAAATATGTCAACAGTTATCCCGTTTAAGCATTACATGAGTAGGTTCAGGTGCTTCTATTGCCCCAAAGACTTTACGGATTGCGACGATCTTAAACAACACACTGTATCAGAACATCCTCTatgtgatattaaattaaaatcaatgaagTTGCGAAACAGAGAGGAGGGACGTGTAAAAATTGACACGTCTACTCTTTCTTGCAAAGAGTGTCGTGTGTCgatattagatttaaattatcTAATTGACCATCTCAATACGGAACATAAAGCTGAAATAGATAAGGGTATTGTAGTACATTTGCAATCCTACAAACTTGTGAGGGACAATTATGCCTGTCCGTTTTGTGAGCAGGCTTATCGATATTTCACGATGCTGTTGAAGCACGTTAGCGCATCTCATACGGACAATAAAAACGTTTGCGCGTACTGCGGCAAATGTTTCCGATCCCATCCGAATCTGAGAGCGCATATATCGCGCCATCACAAATCCGCCGCATATAAATGCGCACATTGCAACACCGAATTTATCACGAACGATCATTTGCAAACGCATCTGGGTAAAACCCACGGCGCCAAAGTCGTGGAATGTCCCGATTGTAAAGATAGATTCACCTCTCGTTACCTCATGCAAAAACATCTGAAGGACTCTCACAAATCCGGACATAAGTATGAAATACACCACGGCCCGTACGAAAACAGGATATCTGAGAGACGGAGGCGAAATTTGCAAATTCTATTCAATAACACGACAATTTTGCCATTTAAATGGCTAGGAAGATGCCTCTGTTTCTACTGCGGAAAAGGCTACACGGAGTACACGGACTTTAGGAAACACACCCGATCCCACGGACCGTGCACTACGAGCGATTATTCCTTGAGGTTAATAAAAGGAAATAACATTGAGATAAAAATCGACGTATCGGAAATAGCATGCGAAATTTGCAACGAACCTTTCGCGCGTTTTGATGAAATAATCGATCATTTAATCGTTAAACACGATATCGATTACGATAAAACGGTCGATACGCCGTTACAAGAGTACAGGCTGTACGATTTCGGTTGTCTTTACTGCGATCAACAGTTCACCTATTTCGGACATTTGGTGAAACATGTCAACAATGTTCATCCGAAGAATAATTACATTTGTAACGAATGCGGTGCCAGTTTCAATAAGAAGCGTGATCTCGCTTTACATTTGAGTCAGTATCATCGTGAAGGGGGATATCCTTGCGGGGAGTGCTCCACGAATTTCGATTCGCATAGCAGTCGACGCAAGCATCAAAACGAATTTCATTTGAGAAAGTGCAAACGTTGCGGTCTAAAATTCGCTTCCCGTCGTCTCCTATTGAAGCACATTCAGTGCGACCATCCGGACGACGGCAGTGTAAAATGTCCGCATTGCTCCAAAGAATGTCATTCACCGCATGGTTTAACCCAAcatgtaattaaatgtaaagcAAATATACTCACGCAAACGCATCAGATCGTTGATAAGAACTTCCCAGGAAACATGGTACAGccgaaaaagaaacaaaacatcATACAAATACGACAGAATATACAGTGTGTACTCAACATGTCCACAGCTCTGCCGTTTAAGTTCTTTGCGAAGTATTGCTGCTTTTATTGCTCGAAGAAGTTCGTAGAGTTCGATGAACTTAAGGACCATACCGTATCGGAGCATCCTGTGTGCGATACAAATTCGAAAAGCTTGAAAAAGTGCAAAGGTGAGAGAATCACAGTGAAAGTGGATATTACAGAATTAAGTTGTAAAGTTTGCGTGCAGCCTATGGATGATTTAAACATTCTAATCGATCACCTTATCTCAGAACACAACGCAAACTACGACAAATCAATAACGGGGTGTCTAGAACCCTACAGAGTGATAAAAGACAACATGCCGTGCCCGATATGTCCCAATCGCGTATTCAGATACTTCGGAATACTTCTTAGGCATATAAATTCAGAGCACAGTAATAATAACAGGATATGCGACTTCTGTGGGCGCAGTTTTAAAAACGttgcaaatttaaaaatgcaCATAACTTACGCGCACACAGGCTCGTGCGAGTGCGAAGTTTGCGGCACAAAATACAAGAACCAGTGGTGTTTGAGTCGGCACATGGCCAAAAGCCACAACGCCAGAGACTACAAATGTCCGAAATGCCCGGAgctgttcaaatcacagtatcACAAGCAGAAACATTTGATCAAAGTCCACGACGTTGGACACAAGTGCACGCATTGCGGGAAAATGTTCACTAGGAACTCGTTCATGAAGGACCATATTCGCCGGATGCATTTGAAGGAGAAGAATGTGGTGTGTTCGGTGTGCAATGAGAGATTCTTCGACAATTATCTGCTGAGGATGCATATGGTGAAACATCAAGGCGATCGTAAGTTCTGTTGCGAAGTATGCGGCAAAGCGTTTCTGCGTAGGAGCAATCTCAGTTCGCATAAGGAAATGCATAAGAAGTACGGACATCTACAGCAGCAAATGTAA
- Protein Sequence
- MNSHASTCNVCFTNFPSANERLRHMKIDHVSDDLQCGFCLKTLTTKQGFLRHAATCTRIDDSVKISNYSIRCDKEKKPSVKKIRHDLAYILNMSTVIPFKHYMSRFRCFYCPKDFTDCDDLKQHTVSEHPLCDIKLKSMKLRNREEGRVKIDTSTLSCKECRVSILDLNYLIDHLNTEHKAEIDKGIVVHLQSYKLVRDNYACPFCEQAYRYFTMLLKHVSASHTDNKNVCAYCGKCFRSHPNLRAHISRHHKSAAYKCAHCNTEFITNDHLQTHLGKTHGAKVVECPDCKDRFTSRYLMQKHLKDSHKSGHKYEIHHGPYENRISERRRRNLQILFNNTTILPFKWLGRCLCFYCGKGYTEYTDFRKHTRSHGPCTTSDYSLRLIKGNNIEIKIDVSEIACEICNEPFARFDEIIDHLIVKHDIDYDKTVDTPLQEYRLYDFGCLYCDQQFTYFGHLVKHVNNVHPKNNYICNECGASFNKKRDLALHLSQYHREGGYPCGECSTNFDSHSSRRKHQNEFHLRKCKRCGLKFASRRLLLKHIQCDHPDDGSVKCPHCSKECHSPHGLTQHVIKCKANILTQTHQIVDKNFPGNMVQPKKKQNIIQIRQNIQCVLNMSTALPFKFFAKYCCFYCSKKFVEFDELKDHTVSEHPVCDTNSKSLKKCKGERITVKVDITELSCKVCVQPMDDLNILIDHLISEHNANYDKSITGCLEPYRVIKDNMPCPICPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKNVANLKMHITYAHTGSCECEVCGTKYKNQWCLSRHMAKSHNARDYKCPKCPELFKSQYHKQKHLIKVHDVGHKCTHCGKMFTRNSFMKDHIRRMHLKEKNVVCSVCNERFFDNYLLRMHMVKHQGDRKFCCEVCGKAFLRRSNLSSHKEMHKKYGHLQQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -