Smon012019.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000036.1:1925756-1931758[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0013 0.12 13.4 3.5 2 23 143 165 143 165 0.96 2 27 2e-05 0.0019 19.2 1.0 1 23 174 197 174 197 0.96 3 27 0.023 2.2 9.5 0.8 2 23 210 232 210 232 0.97 4 27 0.00047 0.045 14.8 1.4 1 23 241 264 241 264 0.97 5 27 0.00011 0.01 16.8 1.2 1 23 276 299 276 299 0.96 6 27 0.0017 0.16 13.1 0.6 2 23 329 351 328 351 0.96 7 27 0.00053 0.051 14.6 1.3 2 23 361 383 360 383 0.96 8 27 0.041 3.9 8.7 0.7 3 20 389 406 388 408 0.93 9 27 0.00026 0.025 15.6 0.1 2 23 413 435 412 435 0.96 10 27 0.0057 0.55 11.4 0.3 3 23 445 466 444 466 0.96 11 27 0.0084 0.8 10.9 5.0 1 20 471 490 471 494 0.95 12 27 0.0013 0.12 13.4 3.5 2 23 556 578 556 578 0.96 13 27 0.023 2.2 9.5 0.8 2 23 595 617 595 617 0.97 14 27 0.00047 0.045 14.8 1.4 1 23 626 649 626 649 0.97 15 27 0.00011 0.01 16.8 1.2 1 23 661 684 661 684 0.96 16 27 0.0017 0.16 13.1 0.6 2 23 714 736 713 736 0.96 17 27 0.00053 0.051 14.6 1.3 2 23 746 768 745 768 0.96 18 27 0.041 3.9 8.7 0.7 3 20 774 791 773 793 0.93 19 27 0.00026 0.025 15.6 0.1 2 23 798 820 797 820 0.96 20 27 0.0057 0.55 11.4 0.3 3 23 830 851 829 851 0.96 21 27 0.00062 0.059 14.4 1.4 1 20 856 875 856 876 0.96 22 27 0.00023 0.022 15.8 1.3 2 23 890 912 889 912 0.96 23 27 0.0006 0.057 14.5 2.3 1 23 937 960 937 961 0.94 24 27 0.23 22 6.4 1.4 2 23 994 1015 993 1015 0.96 25 27 3.3 3.2e+02 2.7 0.9 2 23 1053 1074 1052 1074 0.92 26 27 0.04 3.8 8.8 0.1 1 23 1081 1103 1081 1103 0.97 27 27 0.39 37 5.6 1.9 1 23 1109 1132 1109 1132 0.96
Sequence Information
- Coding Sequence
- ATGTCGCTTGTAGTTGAAGGCGTTGAAGATTTGACCATCAAAAGAAAGGATCCGACGTCTTTTTTGCCGGACGAACCGATGTCGTATGAAATAAAGtccaaaaagaaaaagaagaaaaagaaacacaACCAAGAGGATCCATTTAAAGATATAGAAGCGAATACAGCGAAGCCAACAGAAATAGCACTTGATCCAGAAGTTAACATCAAAGTAGAGAATATTGAAGTGGAGTTAGATTTTAATGATttcGCAAACGACAATGGTCTGATGGTGGAAGGCCCTAATAGCGAGGATAGTCAAGAACCAATCGTGAAATTGGAGCAACAGAATCGTGAAGCAGTTATATTAACTTTTGAGAACATAGTCAATGATAAATCAGTGTTTGGTTACAGCCAGGGCGTCGCGGGTCCCATGGAACCGGTCAATGTGTGCAAAATATGCCATCTCGTGTTCCAATCGCAGAGGACTCTGAAGATGCACCAGAAAAGACAGCACAAAGTGTTTAGGAGATCGTTTAAGCATATCTGTGATTACTGCGGCATGTCTTACGAGCAAAAGACGAGTCTCGTCGCGCACATACGAAGGAAACACGGACCGAACTCGTTGCCCGACGACAAGGAAGAGAGGACGTGCGATATCTGCGCGCTGGTGTTTAAAGGGATGACGAGGTTAAGGATGCATATGCGTCGGAAGCACGGCTCCTTCGAGGAGTCGTTCCGGCACGTTTGCAAGGACTGCGGCCTGACGTACGACAAATATAGAAGTCTGATAGTTCACATACAGAGGAAGCACACGCCGGATAAGAAACCAGCAGTCGACCAGTGGTTCAACTGTCCCTTCTGTCCCAAGGCGTTCACTAAACGCGAGACTTACGCTAGACACGTGCAGAGGAAGCATAGAGTGAGCGATGAGGACGGCTTGAAACAGGGTAATATTGAAGAGAGTTTGTTAGAGAGTTGCAAGAATGACGCGACCGGTGAGATAACGTGTATGCAATGCCCGCTAGTATTCTCTTCCGTGAACTTCCTTAAATTGCACATGAGAAGGAAGCATAACGCATTGCAGGAGAGGTTCAGGCTCAAATGCAGGATATGTAACCTGTCGTACGACAAAATCGAAAGTCTAAAGCGGCATATCAGGAGGAAACACGACAGGGCGTCGTTCTGCGAAGTGTGCAATAAACAATTCGACACGAGAGAGTTGTATTTGAATCACACGCACGTTAAAGTGATCAAGGAGTGCTCAATATGCGGTCTGATATTCGCCTCTCAGGCGGGACTCGGGAAACATTTGCGTTCTACCCACAAAATAGACGCGCCGAAGACCGTCTTCTGCAACGTCTGCAACGAGGGATTCCCCGACAAGAAACAATTGAAGCCGCACCTTATGAAAGTGCATTTAAAAGTGTCGTACACTTGCCGTTATTGTAAGAAAGTGTTCAAAGCGAAAGAGAGTTACAGGCGTCACGTTCTCTGCAAACATCCcttcGCAAACGACAATGGTCTGATGGTGGAAGGCCCTAATAGCGAGGATAGTCAAGAACCAATCGTGAAATTGGAGCAACAGAATCGTGAAGCAGTTATATTAACTTTTGAGAACATAGTCAATGATAAATCAGTGTTTGGTTACAGCCAGGGCGTCGCGGGTCCCATGGAACCGGTCAATGTGTGCAAAATATGCCATCTCGTGTTCCAATCGCAGAGGACTCTGAAGATGCACCAGAAAAGACAGCACAAAGAAACACGGACCGAACTCGTTGCCCGACGACAAGGAAGAGAGAGGACGTGCGATATCTGCGCGCTGGTGTTTAAAGGGATGACGAGGTTAAGGATGCATATGCGTCGGAAGCACGGCTCCTTCGAGGAGTCGTTCCGGCACGTTTGCAAGGACTGCGGCCTGACGTACGACAAATATAGAAGTCTGATAGTTCACATACAGAGGAAGCACACGCCGGATAAGAAACCAGCAGTCGACCAGTGGTTCAACTGTCCCTTCTGTCCCAAGGCGTTCACTAAACGCGAGACTTACGCTAGACACGTGCAGAGGAAGCATAGAGTGAGCGATGAGGACGGCTTGAAACAGGGTAATATTGAAGAGAGTTTGTTAGAGAGTTGCAAGAATGACGCGACCGGTGAGATAACGTGTATGCAATGCCCGCTAGTATTCTCTTCCGTGAACTTCCTTAAATTGCACATGAGAAGGAAGCATAACGCATTGCAGGAGAGGTTCAGGCTCAAATGCAGGATATGTAACCTGTCGTACGACAAAATCGAAAGTCTAAAGCGGCATATCAGGAGGAAACACGACAGGGCGTCGTTCTGCGAAGTGTGCAATAAACAATTCGACACGAGAGAGTTGTATTTGAATCACACGCACGTTAAAGTGATCAAGGAGTGCTCAATATGCGGTCTGATATTCGCCTCTCAGGCGGGACTCGGGAAACATTTGCGTTCTACCCACAAAATAGACGCGCCGAAGACCGTCTTCTGCAACGTCTGCAACGAGGGATTCCCCGACAAGAAACAATTGAAGCCGCACCTTATGAAAGTGCATTTAAAAGTGTCGTACACTTGCCGTTATTGTAAGAAAGTGTTCAAAGCGAAAGAGAGTTACAGGCGTCACGTTCTCTGCAAACATCCCGTGAACAGCTTAAGTAACCATTCGCAAAAGTGCGAGCATTGCACGGAAACGTTTCCCGACGAGGTGGAACTGTGCAGACATATCAGTATAGCTCACGGGAAACAACCCGAATGCACGAGCACGGAAGTTGTTATAGTTAAGAAAGAGGAAATAGATTATAAGGAGCCATTCCAGTGCACCAAGTGTCCCGAATCGTACTTCACATGGGAGCAGTTACGGTTGCATTACGAACAAAACCACCACACGGTCGAAGACGTGCAGTGTCAGATGTGCGGCGAAATAGTCCCGGGGAATGAGTTCGAGAGGCACGTCAAGAACTCTCACACGGAAACCAACCTCCAGTGTAAATACTGCGAATTTCGCACGAGCATACGCGCCAGTATGACACAGCACACCCTGAGGCATAAGAACGTGACGACCCTGAACTGCGACTTCGAGGGATGCAGATACAAGACTTTCTACGAGGGCGCGATGGTCAAGCATAAGAAGAGACACACGGATTTGGGCGTTAAGTTGCAGTGTAGTCAGTGCTCGTTCCGGACCATGAACAAATACGTCCTGAAGTACCATGAAGAAGCTCACGCGACGGGAAAGAAGAAGTATACATGTGACCAGTGCGATTACGCGACGGTGTTGCCAGCTGGCCTGGTCCAGCACAGGTACAAGCATTCCGCTGAGAAGCGGTTCAAGTGCGAGGTTTGCCCCTTCGCCTCGAAGTACAACACCTCTTTACGGTTTCACGTGAAGAAGAAACATTGTGATCTCCCTTCGTTCAGTTGA
- Protein Sequence
- MSLVVEGVEDLTIKRKDPTSFLPDEPMSYEIKSKKKKKKKKHNQEDPFKDIEANTAKPTEIALDPEVNIKVENIEVELDFNDFANDNGLMVEGPNSEDSQEPIVKLEQQNREAVILTFENIVNDKSVFGYSQGVAGPMEPVNVCKICHLVFQSQRTLKMHQKRQHKVFRRSFKHICDYCGMSYEQKTSLVAHIRRKHGPNSLPDDKEERTCDICALVFKGMTRLRMHMRRKHGSFEESFRHVCKDCGLTYDKYRSLIVHIQRKHTPDKKPAVDQWFNCPFCPKAFTKRETYARHVQRKHRVSDEDGLKQGNIEESLLESCKNDATGEITCMQCPLVFSSVNFLKLHMRRKHNALQERFRLKCRICNLSYDKIESLKRHIRRKHDRASFCEVCNKQFDTRELYLNHTHVKVIKECSICGLIFASQAGLGKHLRSTHKIDAPKTVFCNVCNEGFPDKKQLKPHLMKVHLKVSYTCRYCKKVFKAKESYRRHVLCKHPFANDNGLMVEGPNSEDSQEPIVKLEQQNREAVILTFENIVNDKSVFGYSQGVAGPMEPVNVCKICHLVFQSQRTLKMHQKRQHKETRTELVARRQGRERTCDICALVFKGMTRLRMHMRRKHGSFEESFRHVCKDCGLTYDKYRSLIVHIQRKHTPDKKPAVDQWFNCPFCPKAFTKRETYARHVQRKHRVSDEDGLKQGNIEESLLESCKNDATGEITCMQCPLVFSSVNFLKLHMRRKHNALQERFRLKCRICNLSYDKIESLKRHIRRKHDRASFCEVCNKQFDTRELYLNHTHVKVIKECSICGLIFASQAGLGKHLRSTHKIDAPKTVFCNVCNEGFPDKKQLKPHLMKVHLKVSYTCRYCKKVFKAKESYRRHVLCKHPVNSLSNHSQKCEHCTETFPDEVELCRHISIAHGKQPECTSTEVVIVKKEEIDYKEPFQCTKCPESYFTWEQLRLHYEQNHHTVEDVQCQMCGEIVPGNEFERHVKNSHTETNLQCKYCEFRTSIRASMTQHTLRHKNVTTLNCDFEGCRYKTFYEGAMVKHKKRHTDLGVKLQCSQCSFRTMNKYVLKYHEEAHATGKKKYTCDQCDYATVLPAGLVQHRYKHSAEKRFKCEVCPFASKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -