Scos014456.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- pnr
- Assembly
- GCA_949820665.1
- Location
- OX463302.1:6281552-6282437[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-08 0.00011 22.9 0.2 22 35 2 15 1 16 0.91 2 3 1.7e-08 7.2e-05 23.5 0.1 21 35 96 110 94 111 0.90 3 3 1.7e-07 0.00074 20.3 0.1 21 35 197 211 195 212 0.90
Sequence Information
- Coding Sequence
- ATGGTCTGCAACGCGTGCGGGCTCTACTACAAGCTGCACGGCGTCCCGCGGCCCACTGCCATGCGCCGCGACACTATACACACCAGGCGCCGCCGGCCGAGACACGACCCCAAGCACAGGAACACCGGTACAGATGGTCTGCAACGCGTGCGGGCTCTACTACAAGCTGCACGGCGTCCCGCGGCCCACTGCCATGCACCGCGACACTATACACACCAGGCGCCGCCGGCCGAGACACGACCGCCTAGCACAGGAACAGTTAGTATCACACTACAGCCGGTACAGATGGTCTGCAACGCGTGCGGGCTCTACTACAAGCTGCACGGCGTCCCGCGGCCCACTGCCATGCGCCGCGACACTATACACACCAGGCGCCGCCGGCCGAGACACGACCGCCTAGCACAGGAACAGTTAGTATCACACTACAGCCGGTACAGATGGTCTGCAACGCGTGCGGGCTCTACTACAAGCTGCACGGCGTCCCGCGGCCCACTGCCATGCGCCGCGACACTATACACACCAGGCGCCGCCGGCCGAGACACGACCCCAAGCACAGGAACAGTTAGTATCACACTACAGCCGGTACAGATGGTCTGCAAGGCGTGCGGGCTCTACTACAAGCTGCACGGCGTCCCGCGGCCCACTGCCATGCGCCGCGACACTATACACACCAGGCGCCGCCGGCCCAGACACGACCCCAAGCACAGGAACAGTTAG
- Protein Sequence
- MVCNACGLYYKLHGVPRPTAMRRDTIHTRRRRPRHDPKHRNTGTDGLQRVRALLQAARRPAAHCHAPRHYTHQAPPAETRPPSTGTVSITLQPVQMVCNACGLYYKLHGVPRPTAMRRDTIHTRRRRPRHDRLAQEQLVSHYSRYRWSATRAGSTTSCTASRGPLPCAATLYTPGAAGRDTTPSTGTVSITLQPVQMVCKACGLYYKLHGVPRPTAMRRDTIHTRRRRPRHDPKHRNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -