Scos007645.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- pnr
- Assembly
- GCA_949820665.1
- Location
- OX463297.1:25765195-25774313[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-18 4.3e-14 53.1 4.1 1 35 79 112 79 113 0.97 2 2 4.4e-18 1.9e-14 54.2 6.0 1 34 133 165 133 167 0.98
Sequence Information
- Coding Sequence
- ATGGATACTCTACCGCTGCATCCGAGCTGGCTGCAAAACATCGCCTTGCTTGCAGcaggcggcggcggcgtgggCGCGGTGGGCGGCGTGGGCAGCGTGGGCGGCGTGGGCGCCGTGGGCGGCGGGCTGTATGGGCAGAACGTGGTGATGGGCTCCTGGTGCCCGCCCTACGACGCGCTGCAGAGACCTACTGCTTACGATGGCGTGCTGGAGGCATACGAGGAGGGGCGCGAGTGCGTGAACTGTGGCGCGAACAACACGCCGCTGTGGCGCCGGGACTCCACCGGCCACTACCTGTGCAACGCGTGCGGCCTCTACCACAAGATCAACGGCGTGAACCGGCCGCTCGTCAAGCCAAGCAAGCGCCTGTCAGCTGCGCGGCGTCACGGACAGTGCTGCACCAACTGCGGGTCGCGCAACACCACGCTCTGGAGACGCAACAACGACGGAGAACCAGTCTGCAACGCCTGTGGGCTTTACTACAAGCTACATGGAATCAACAGGCCGTTGGCGATGCGCAAAGAAGGCATCCAGACTCGGAAACGGAAGCCGAAGAAGAGCGCATCTTCAGGCTCCAAACCGGCCTCCATCGAGCCAGCCAAGAAGGAGGGCCACAGTTCACCAGGACTTGATGACAGCAAACAGAGCCTGGAAGTGTCCCTACCCTTGAACTCATCACTGTCTCACTCGAGCAAGCAgcgcgacagcgtcccgccggCCGACAGCCCGCACTCGCACCACAGCGGGCACGCGCACGCGCACGCGCAGCACCACGCGCACGCGCAGCACGCCGCGCACGCGCACGCGCAGTACGGGCTGCTGGGCAACGCGGCCTTCCTGTCCAACCCCGCGCTGTTCAACATCAAGAGCGAGCCGAGCGCCGCCGCGCCCTACGAGtacccccccgcgcccgcgctcgcgcccgcccccgccccgcaCGCGTCCTCGCAGCACTACCACTCGCACCAACATTACCTCCACGCGCTGCAGCAATACGGGCTGAGCGGCggggaagaagaagaaggcagtGGTTTCCTCCACCAGCGCAACGTCACCGCGCACGCCAAGCTCATGGCCTCCACGTAG
- Protein Sequence
- MDTLPLHPSWLQNIALLAAGGGGVGAVGGVGSVGGVGAVGGGLYGQNVVMGSWCPPYDALQRPTAYDGVLEAYEEGRECVNCGANNTPLWRRDSTGHYLCNACGLYHKINGVNRPLVKPSKRLSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKEGIQTRKRKPKKSASSGSKPASIEPAKKEGHSSPGLDDSKQSLEVSLPLNSSLSHSSKQRDSVPPADSPHSHHSGHAHAHAQHHAHAQHAAHAHAQYGLLGNAAFLSNPALFNIKSEPSAAAPYEYPPAPALAPAPAPHASSQHYHSHQHYLHALQQYGLSGGEEEEGSGFLHQRNVTAHAKLMAST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501748;
- 90% Identity
- -
- 80% Identity
- -