Scos039146.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463324.1:5195529-5204675[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.45 49 5.9 0.4 3 23 28 49 27 49 0.94 2 19 0.19 21 7.0 0.0 2 23 77 99 76 99 0.93 3 19 0.07 7.7 8.4 1.0 2 23 125 146 124 146 0.93 4 19 0.019 2.1 10.2 3.1 1 23 150 173 150 173 0.97 5 19 1.4 1.6e+02 4.3 0.2 2 22 178 198 178 198 0.91 6 19 0.69 74 5.3 3.7 1 23 205 228 205 228 0.94 7 19 0.00058 0.063 15.0 3.3 2 23 237 259 236 259 0.96 8 19 0.014 1.5 10.7 2.3 2 20 265 283 264 286 0.89 9 19 7.5 8.2e+02 2.0 0.9 2 23 470 492 469 492 0.87 10 19 0.021 2.3 10.1 2.3 2 20 516 534 515 537 0.90 11 19 2.6 2.9e+02 3.5 0.1 3 22 586 605 585 607 0.79 12 19 0.28 31 6.5 7.2 2 23 679 700 678 700 0.96 13 19 0.25 27 6.7 2.6 1 21 704 724 704 727 0.93 14 19 0.53 58 5.7 0.2 1 21 731 751 731 752 0.93 15 19 0.98 1.1e+02 4.8 0.6 1 23 759 782 759 782 0.88 16 19 0.0069 0.75 11.6 1.1 1 23 789 812 789 812 0.94 17 19 0.28 31 6.5 3.9 1 23 817 839 817 839 0.96 18 19 7.1e-05 0.0077 17.9 1.4 1 20 845 864 845 867 0.94 19 19 6.4e-06 0.00069 21.2 2.1 1 23 873 896 873 896 0.95
Sequence Information
- Coding Sequence
- ATGACCAAGAAGAACGTAGAAGTATTGCTGCGCTACACCAGTGGATATCCCTTCCGGTTGAGAGGGAAAGATGAAATACTCTGCGTCTATTGCTTAAATGGATACAAGGACCCCGAAAAATTTAGGACACATATGAACTTCGATCACGAAagtgtaaatttaaatttggctttgCATCATTGTAAATCATTGGGGTATCAGATTAAAGTGGACTACGTGGATGATATCGTATGCCAAATATGTTGGGAGAAATTTCCAACCCTCGTAGAAATCGCGGAGCACTTGCAAGAGGATCATCCGAAGAAAACCAAAGACCTGAACTTAAACCATGATCTTGGAATACATCCTTATAAGCTAAAGACCAACAATTGGATTTGTACCGTCTGTAAGAAGAAATTGCCGACAATCTATGCGCTTTGCAAGCACACCACGGCTCATTACGTAAAGCATAAGTGCGTGACTTGCGGGAATAGCTACTTGACACGTAGCTCTCTGCTACAACACATGAGATACAAACACGCGCAGAGCGAAGTGTGCAGGAAGTGTTGGCAAGAGTTCGCTACTAAACAGGAACGGCTTGATCACGTCAAAACGTCGTCCAGATGTCTCCCGTTTCCGTGCTACAAGTGCGGGGAGCGATTTCTATCTCATGATAGCAGAAAAAGACATTACCAGGAATTCCACGGAGAATCCGTCGAATCGGTTCTCGAATGCCCTGATTGCAATATGAAGTTTAGCCAACGCCACCAGTTTTATGAACATTACAAAAAGAATCATTCGGACGATTGCATCGTATGCCATTTTTGTAGTAAAAAGTTTACTAGTAAAAGTAAACTGGACGGTCATTTGCCTAAACATAGTGAGAGTGAGACTGAAATCGCTGATGATCTTCCTGTTGTTCTCGCTGATCAGCTTCCTGATGTAATCGCCGATGAGGTAGTTGTGGTACTCGCTGATGGTGATATTGTAGCTGTTGATGATGATAACACTGTAgctgttgatgatgatgatgatgataattactCTTCAGAAATCCCCGATGAGCCTGACGAACTCCCTGTGGTACTCGCTGGTAATGATAATGTAGCCGTTGATGGGAATGACCCTTTAGAAAGCCCCGATGAGTTTGATGAACTCCCTGATAAGTCTGATGAAAATGGTGGGAAATCCAAGATGTCACGTCGTGAGAGAATGCAAAACGTGCAGATCATACTGCGTTTCTCTACTGCATACCCGTTCAAACTAATGAAGGCGAATACGATCGTATGTGTCTACTGTCTGGACGAATTCCTAGACCCGGACGAGTTTAGGAAACATATGGATGACGACCACAAAAATCCTAATGTAAGCATCGCCGTCACACACACCAAGAGTATGATGTTTGTGAAAGTAGATTGTACCAACCTCCGCTGCAAAATCTGCCAAGCGCCATGTGAAACTGTCGAAGAGTTCGGGGTGCATCTCCACGACACACATGGCTTTACTACATTAAACCTGGAGGCTCCATTACGTATTCATCCTCATAAACTGATAGCGGATAATTGGAAGTGTTGTTTGTGCACAAAGAAGTTCGCTTCAATATATAATTTAGTCAAGCACACACCGACACATTTTTCAAAGAACACTTGTGAAATCTGCGgtGAGATTGAATGGGGACGCAACCAGAACCGCCCCGGCAAAATGCAGAACGCTGAAATACTGTTGCAATATTCAACAGCGTATCCCTTCCGATTAAAAGGTGTCAACACTATTCTATGTGTTTACTGCATGGATGAGTTCAAACAACCTGATGAGTTCAGGCGCCATGTTGATGACGAACACAAAGATTTTAAAGTGAGCAGCGCAGTCTGGCACTCGAAAACTATGGGGTATCTTAAGGCTGATTGCACTAACCTTCGCTGTAGGGTGTGCTTAAACCCATTTGAAACTCTAGATGAAATCGCGGTACATCTCTACGAGATGCACGGGCTAACAGATTTGGATTTAGAAAATGAACTCGGTATTCATCCTTATAAGCTACAAACTGATAAGTGGcattgttgtgtttgtgacaaaAAGTGTGCGTCAATGTATAGTCTTTCTAGACATACAACGACACATTTCTCTAAACACACTTGCGATATCTGTGGAAAATTTTATCTCACGACCATGGCCTTGAAATACCACATTAGATGTGCTCACGGGAAAAACCACACATGCAGAAAGTGCTGGGAAGAATTCGGGAGTAAAGAAGAAAAGGCAGAGCACATCAAAATCTCTAAACGTTGCCAGCCCTTCATGTGTGTTACATGCGGAGAAAGATTCCTATCTTGGGAactcaaagaaaaacatagaacagaGTTCCACGGACAATCAAAGAGATCTTATGTATGCCCTGATTGTGGGCAAGAGTTTGATACACGCAGAATCTTCTACAAACATTACAAGCTGAAACATACTGACGATTGCTACATCTGCAGTTGCTGTGGCATGAAGTTTGAGAGGAAACACAGATTGGATGAACATCTTAGGGGCCACACGGGGGAGAAAATGTTCAGTTGCGAGGTCTGCAAAAAACGGTTCTCGCTGAAAAAGAATCTTACACAGCACATGTGGATTCACAGTGATAAAAAGAGGTTTCTTTGTCATATTTGCAACAAGCAATTTGCTCAGAAAGTTAGTTTAAATGCTCATATGAAGTCGTATCATCCTGTTTTAGAAGATCAGGTAGAAGAGGCGAATGTTAGTGAAACATACCAACCGGGTACTGAAAACGAGATTATGGAAATTGTACTAAATGACCCTAGTTCTAATAACCTCTCCTAA
- Protein Sequence
- MTKKNVEVLLRYTSGYPFRLRGKDEILCVYCLNGYKDPEKFRTHMNFDHESVNLNLALHHCKSLGYQIKVDYVDDIVCQICWEKFPTLVEIAEHLQEDHPKKTKDLNLNHDLGIHPYKLKTNNWICTVCKKKLPTIYALCKHTTAHYVKHKCVTCGNSYLTRSSLLQHMRYKHAQSEVCRKCWQEFATKQERLDHVKTSSRCLPFPCYKCGERFLSHDSRKRHYQEFHGESVESVLECPDCNMKFSQRHQFYEHYKKNHSDDCIVCHFCSKKFTSKSKLDGHLPKHSESETEIADDLPVVLADQLPDVIADEVVVVLADGDIVAVDDDNTVAVDDDDDDNYSSEIPDEPDELPVVLAGNDNVAVDGNDPLESPDEFDELPDKSDENGGKSKMSRRERMQNVQIILRFSTAYPFKLMKANTIVCVYCLDEFLDPDEFRKHMDDDHKNPNVSIAVTHTKSMMFVKVDCTNLRCKICQAPCETVEEFGVHLHDTHGFTTLNLEAPLRIHPHKLIADNWKCCLCTKKFASIYNLVKHTPTHFSKNTCEICGEIEWGRNQNRPGKMQNAEILLQYSTAYPFRLKGVNTILCVYCMDEFKQPDEFRRHVDDEHKDFKVSSAVWHSKTMGYLKADCTNLRCRVCLNPFETLDEIAVHLYEMHGLTDLDLENELGIHPYKLQTDKWHCCVCDKKCASMYSLSRHTTTHFSKHTCDICGKFYLTTMALKYHIRCAHGKNHTCRKCWEEFGSKEEKAEHIKISKRCQPFMCVTCGERFLSWELKEKHRTEFHGQSKRSYVCPDCGQEFDTRRIFYKHYKLKHTDDCYICSCCGMKFERKHRLDEHLRGHTGEKMFSCEVCKKRFSLKKNLTQHMWIHSDKKRFLCHICNKQFAQKVSLNAHMKSYHPVLEDQVEEANVSETYQPGTENEIMEIVLNDPSSNNLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -