Scos038836.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463324.1:1852975-1855571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 12 7.9 2.4 1 23 74 97 74 97 0.91 2 13 1.3 1.4e+02 4.5 0.1 2 23 124 146 123 146 0.94 3 13 1.6 1.7e+02 4.2 1.0 2 23 169 190 168 190 0.94 4 13 0.055 6 8.8 1.9 1 23 321 344 321 344 0.96 5 13 0.072 7.9 8.4 0.1 3 23 372 393 370 393 0.95 6 13 0.046 5 9.0 2.2 2 23 416 437 415 437 0.96 7 13 7e-05 0.0076 17.9 0.2 1 23 441 463 441 463 0.98 8 13 0.00044 0.048 15.4 0.5 2 23 473 495 472 495 0.94 9 13 0.26 29 6.6 0.4 3 23 502 523 501 523 0.93 10 13 6e-08 6.6e-06 27.5 0.9 2 23 531 553 531 553 0.98 11 13 0.12 14 7.6 4.4 1 17 559 575 559 581 0.80 12 13 0.00032 0.035 15.8 3.3 1 23 587 609 587 609 0.98 13 13 0.00072 0.078 14.7 5.2 1 23 615 638 615 638 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATGATCAATCGTGCAACATCGGTTTACCTAGTAGAACTGGAGATCAGAGAAGGGTTAGCAACCCTGGTCAAAGTCCTGGTATAATCCGTCCATGTACCGTTGTAATGAAATCCTCAGAACAAGATAAAGATGAGCTTACCAAGCATCGTGATAACATTCGAGAGGTCCTACTGTGCTCTAACGCAACGCCTATCAGGCTAGGAGGTACCAGCTATACATGCTGCTTTTGTACTAATAAATACACTAATCCACAAGAACTCAAGGTACACAACCTGTTAGCACATGGAGAAAGTGAATATAGCACGTTTATGCAAACTACTATGATGTACACGTTTGTAGTGAAACTAGATATCACTGATTTAGTATGCACTATATGTAGTAATAACATTGACAGCTTAAAAGATCTATTGGAGCATTTAAAAAATGATCACAGCAGAAACATTCATTTAGACATCAACAATCGTATCGTGCCATTCAAACTTCCAGATGAGAAACTGAAATGCGCTCTCTGCCCAAATGAATATCAAGCGTTCAAACTGCTACAACAACATATGCATTCTCATTATGCAAACTTTATTTGCGAAACTTGTACACAGGAACAACACGTACAAAGTAAGTCTCCTCTTAGTACGGAACGATCCAAAGTGAACACCATAGTACAGACAAGTCTACAGGAAAAGGCCTTGGAATTATTAAAAGATAAAACAGAGATTACGGTAAATTTAAAGTGTAGGGCCATGGGAGATGATAAAACGTTCAACATCACTTCACCTAGTAGAACCGATCAGAGAAGGGTCAGCACCCCTGGTCAACGTCCTGCTATAATACGTCCAAATACCGTTGTTATTAAATCCtcagataaagataaagatgagCTTACCAAGCATCGTGATAACATTCGAGAAGTTCTACTGTGCTCTAACGCTACGCCTATCAGAAAAGGAGGTGTCAGCTATATGTGCTGTTTTTGTAACAATCAATACATTAATCCTCAAAATCTCAAAGAACACAACCTGACAGCACACGGTGAAAGTGAACGTAGCAAGTTTATGCAGACTACTGTGAGGTACAAGTTTGTAGTGAAACTAGATGTCTCTGATTTAGCATGCACTATATGTGGTAACAACATTGATAGCTTAGAAGATCTAttaaagcatttaaaaaatgatCACAGCAGAAAAATTCATTTACATATCAACAATCTTATAATACCATTCAAACTTCCAGACGAGAAATTGAAATGTGCCATGTGTCCAAATGAATATCAAACGTTCAAACAACTACAACAACATATGCATTCTCATTATAGAAACTTTATTTGTGAAACTTGTTCAGCACCATTCATGAATCAATCACAACTTGCCAATCACTTAAAAACCCACAAACAAGCGGCAGCTGATCCAAAATGCCAGTGCCCAGTATGCCCTAAAGCGTTTCCCTCCGTGGCACGTCTAAACCACCATGTCAGAGACGTACATTCCAAACCTAAAGTATTATGTTCGTTCTGCAAAGAATCTTTCGACAACCTGCCATTGCGGTTGAAGCATATGTCGGATGTTCATGGAGTGAAGGTACGAAAGCGCAAATGTAACGTGTGCGATAAGGTCTTTTCTACAGCAAGCGATTTAAAGCAACACATACGAAGGAACCATCTGCTAGAGCGATCCCATTCGTGTCCACATTGCGACAAGAGATTTTTCTCAAAATATGAAGCTAACTGTCACGTAATCGCGCATATTGGTGGGAAAGAGTTTCAGTGTGAGTTTTGCCACAAACGATTCGGAAGGAGGAAGTCTATGGTTGAACACATTAAGATTCATATGAACGATCGCCGCTTTGAATGTAGACATTGCGGAATGAAGTTTGTGCAGAACTGCAGTTTGAAAGGACACTTGCGATCTAAACATGGCGAGGAGGCGAAATGA
- Protein Sequence
- MADDQSCNIGLPSRTGDQRRVSNPGQSPGIIRPCTVVMKSSEQDKDELTKHRDNIREVLLCSNATPIRLGGTSYTCCFCTNKYTNPQELKVHNLLAHGESEYSTFMQTTMMYTFVVKLDITDLVCTICSNNIDSLKDLLEHLKNDHSRNIHLDINNRIVPFKLPDEKLKCALCPNEYQAFKLLQQHMHSHYANFICETCTQEQHVQSKSPLSTERSKVNTIVQTSLQEKALELLKDKTEITVNLKCRAMGDDKTFNITSPSRTDQRRVSTPGQRPAIIRPNTVVIKSSDKDKDELTKHRDNIREVLLCSNATPIRKGGVSYMCCFCNNQYINPQNLKEHNLTAHGESERSKFMQTTVRYKFVVKLDVSDLACTICGNNIDSLEDLLKHLKNDHSRKIHLHINNLIIPFKLPDEKLKCAMCPNEYQTFKQLQQHMHSHYRNFICETCSAPFMNQSQLANHLKTHKQAAADPKCQCPVCPKAFPSVARLNHHVRDVHSKPKVLCSFCKESFDNLPLRLKHMSDVHGVKVRKRKCNVCDKVFSTASDLKQHIRRNHLLERSHSCPHCDKRFFSKYEANCHVIAHIGGKEFQCEFCHKRFGRRKSMVEHIKIHMNDRRFECRHCGMKFVQNCSLKGHLRSKHGEEAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -