Scos038837.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463324.1:1856060-1865275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.8 2e+02 4.0 1.6 1 23 240 263 240 263 0.89 2 20 9.7 1.1e+03 1.7 0.4 1 20 414 433 414 436 0.88 3 20 0.016 1.8 10.4 0.4 2 23 461 483 460 483 0.94 4 20 0.47 51 5.8 6.1 2 23 506 527 505 527 0.97 5 20 0.39 42 6.1 0.3 1 23 531 553 531 553 0.94 6 20 1.3 1.4e+02 4.4 3.1 1 21 587 607 587 610 0.81 7 20 0.0038 0.41 12.4 0.4 1 23 617 640 617 640 0.96 8 20 0.098 11 8.0 1.1 1 23 646 668 646 668 0.94 9 20 3.4e-06 0.00036 22.0 2.3 1 23 674 696 674 696 0.99 10 20 0.00039 0.042 15.5 3.3 1 23 702 725 702 725 0.96 11 20 0.52 56 5.7 3.0 1 23 779 801 779 801 0.97 12 20 1.6 1.7e+02 4.2 0.4 1 23 876 899 876 899 0.89 13 20 0.05 5.4 8.9 0.1 2 23 928 950 927 950 0.94 14 20 0.014 1.5 10.7 2.5 2 23 977 998 976 998 0.97 15 20 0.062 6.8 8.6 0.0 1 23 1002 1024 1002 1024 0.96 16 20 0.13 14 7.6 1.4 1 23 1029 1052 1029 1052 0.92 17 20 0.054 5.9 8.8 1.0 2 23 1060 1082 1060 1082 0.94 18 20 0.00054 0.059 15.1 3.0 2 23 1089 1110 1089 1111 0.95 19 20 0.015 1.6 10.5 0.5 1 23 1117 1139 1117 1139 0.94 20 20 6.8e-06 0.00074 21.1 0.5 1 23 1145 1168 1145 1168 0.98
Sequence Information
- Coding Sequence
- ATGAGAGATGATCAAACGGTCAACATCACTTCACCTAGTAGAATCGGAGATCAGAGAAGGGTTAGCAACCCTGGTCAACGTCCAAGTACCGTTGTAATTAAATCCtcagataaagataaagatgagCTTACCAAGCATCGTGATAACATTCGAGAGCTTCTACTGTGCTCTAACGCAACGCCTTTCAAACTACGAAGTAACAGCTATATGTGCTGCTTTCGTACTAATCCACAAGAACTCAAAGAACACAACCTGATAGCACATGGAGAAAGTGAACATAGCAAGTTTATGCAAACTAATGTGATTGCACATTTTTTTGTGAAACTAGATATCACTGATTTAGCATGCACGATATGTGGTACACAGGATCAACGCTTCCCACGTAAGTCGCCTAGAGGTGTTACGAAACGATCCAAAGTACACACTAAAACCAGTCTTCAGGACAAAGCCGTTGCATTAATAGATAAATCTGAGGTAAAGGCGAAACGAAAGAGCAGGGCCATTGGTGATGATAAATCTTTCAAAATCACTTTACCGAGTAGAACCGAAGTTCAGAGGAGGGCTAGTAACCCTGGTATTCCGCCTGTTATAATGTGGACTACTGCTCAAAATGACTCCTTAGATCAAGATAAAGAAGAGTATAACAAGCATCGTGATAACATTCGAGAGGTTCTTCTATGTTCCAACGCAACACCAATAAAATCTGGAGGTCTAAGCTATAACTGTTGCTTTTGTGTTGGACAATATTCTAATCCACGGGATCTGAGAAAACACAATCTGGAAGTTCACGGAGAAAATGAACGAAGCAAGTTTATGCAGAAAGTTTCCAAAAACGAATTTTTAGCTAAACTTGATATCACTTCTTTGGTATGCGTTTTGTGCGGTGAACAACGCGTGACAGTGAAAATAGAACGTGACAGCGACGACTGGCACGTTCCACTAGTGAAAATGGAAAACCGGTATGACGTACGTAAAGTACCGATAAGCCAAAGAGTAGCAGAAACGCATGATCATTTTCAAAACAATACATTACACAAAGATTGTGAGACAGCAAATCAATCGAGTTTTTCAGAACATTGTAAAATAGACGCTGTTAACAGACTTCGTAAGAGTGAAGAGGTACCGACTAAAATTGCGAAGGTTAAAATTgtaacgaaaaaagaaaaacaaattgcCAATATTAATGCCATACTTACTCATTCAAACGCAACTCCGGTAAGGACTCATCTCGATACAGGCTACGCGTGTTGCTTTTGTGATGCGACGTATCTCGATGCTGCGGATTTGAAATTACACAATGTAGAACATGGCGATCTCACgcaagtaataaaaaaagttcgcTCTTCAAAAATGCTTTTGAAACTAGACATAACTGCACTCTATTGCAAAATTTGTCACGAGAATATAGACTCACTAGAAAACTTAATCAAACATTTGAAGGATGCTCATGAGAAATCAGTATATGTCGATATTCACAACCAAGTTGTCCCATTCAAATTCGACAACAAAACCATTCGGTGCCACATCTGCTGCAAAGATTTTACGAAATTTAAAATGCTCTTACAGCATATGAACCAACACTTCAAGAATTACGTTTGCGAAATATGTGGAGATGGCTTCCTTAATCAAATGTCTTTCAAAAAACACAACGGCACACATCAAGTTGGTCCACATCGATGCAGCCGGTGTCCCCAAATATTCGACACAGTGCAAAAGAAAAGACTACATGAGCATAACGATCACAGATTGGATATGCGATACAAATGCGGCTATTGCACTGAGAAATTCAACACTCACAGACGGAAGGTTATGCATTTGTCGGAGCGGCATGGGATTCAACCGACAACATTCGATTGCTACATGTGCGGCAAACAATTTGAAGGGAGGTTTCTTATGAACGCGCATGTAAGGCGAGTTCATATGATGGAGAAATCTCATGCGTGCGAGTTCTGCAGTATGTCCTTCTTCAATATAAGGGAACTCGAGCAGCACGTCGTGAAACATACTGGTGTTAGGGAGTTCAAATGCGATGTATGTTCAAAAACGTTTGGTAGAAAGAAAACATTACGTCAGCACTTGAGGATTCATGAGAACGACCGGAGGTTTAAATGTAACCATTGTAATCAGGGCTACGTCCAAAAGCGTGACTGGAAAAGGCATATGTTTTCGGTACATGGTACTGAAGAAGTTGATTGTAAGAATGAAGTGTCAAAGATTGGCGATGAAGAAGTTGACACCGAAGAACAGATAGAGATGAAAAAACATGCACATAATTTAAAAGAGATCCTATTGTGCTCAAACGCCACACCCATCGGACCTTCACACATAGATGGCTTCAAGTGCGTCTTCTGCAAAACGAAATGCGAGGATCTTCCGAAACTCAAAAACCACGCTAAAGAACACCCAGATGTTAAGAAAGAGACATTTGCTCAAAAACGTGAACACAGCAATGAAGGTATGTCCAAACGCAAAGGGAAAGACATCCTTACTCGAGAAATGCTTGAAAACGATAAGGTATCAGAGAAAGTGAAGCTCAAGATTGAACGTGAGAAACACTATAACAACATCCGCCAGGTTCTGGCGTGTAGCAACGCAACGGCGATCAGAACGCAAAGTGACGGCTTCTACATCTGTTGCTTTTGTGATGACATGTTCCCAGAACCGGCAGAGCTCAAGGAACATAACATACAACAGCACACTGGCGAGGACATAAAAAGAGCTACATTTCTTAGGCGAACTCACCTGAACAATCTCCACGTCAAAATGGACATAACAGGCCTTCAATGCAATCTGTGTAAGCAAGATTTTGATAATCTTGAACCTCTTATGGAACATTTGAAAGCGATTCACGATAAAGCCGTCTACACAGACATAAATAGCAGAATGATACCTTTTAAGTTCACACCGGGAGCGGAAAAGGAACTGTTGACATGTTTCATGTGCTTTAACGTCTTCAACAAACTAAAGACGTTGTTTAATCATATGAACACGCATTATAGAAACTTTATCTGCGAGATTTGCGATGCTGGCTTCATCACCAAAACCATGGCTGTCGAACATGGCAATACGCATATGAACGGAACATTTGAATGCAATTTCTGCCCCGAAGTGTTCCCTACTCGTTTGAAGAAAACCAACCACGAGAGATTTAGGCACCCACAAGGCGAAGGGCTAAACGTATGCCGCATTTGCGAGAAAAGATTCAAGTCCTACTTTCAAAAGGAGCTTCATCTTAAAGAAGTACATGGGGTCGGAGCCGACGCCAAATGCCAGGCGTGCGAGAAAGTATTCAACTCGCAAAAAAAACTAAGATACCATATCAGGATACACCATCTGATGGACAGAAAGTACAAGTGTACTATGTGTGATGCGGCATACTTCACAAGCATACAACTCACTGAGCACAATGTCAAACACACTGGTATCAAGCCGTACCAATGCGATATCTGTCAACGAGCGTACCCGCGGAAGAAATCTTTGTTGAGGCACGTGAAAACTGCACACATGGACGTTAATACTTACTGA
- Protein Sequence
- MRDDQTVNITSPSRIGDQRRVSNPGQRPSTVVIKSSDKDKDELTKHRDNIRELLLCSNATPFKLRSNSYMCCFRTNPQELKEHNLIAHGESEHSKFMQTNVIAHFFVKLDITDLACTICGTQDQRFPRKSPRGVTKRSKVHTKTSLQDKAVALIDKSEVKAKRKSRAIGDDKSFKITLPSRTEVQRRASNPGIPPVIMWTTAQNDSLDQDKEEYNKHRDNIREVLLCSNATPIKSGGLSYNCCFCVGQYSNPRDLRKHNLEVHGENERSKFMQKVSKNEFLAKLDITSLVCVLCGEQRVTVKIERDSDDWHVPLVKMENRYDVRKVPISQRVAETHDHFQNNTLHKDCETANQSSFSEHCKIDAVNRLRKSEEVPTKIAKVKIVTKKEKQIANINAILTHSNATPVRTHLDTGYACCFCDATYLDAADLKLHNVEHGDLTQVIKKVRSSKMLLKLDITALYCKICHENIDSLENLIKHLKDAHEKSVYVDIHNQVVPFKFDNKTIRCHICCKDFTKFKMLLQHMNQHFKNYVCEICGDGFLNQMSFKKHNGTHQVGPHRCSRCPQIFDTVQKKRLHEHNDHRLDMRYKCGYCTEKFNTHRRKVMHLSERHGIQPTTFDCYMCGKQFEGRFLMNAHVRRVHMMEKSHACEFCSMSFFNIRELEQHVVKHTGVREFKCDVCSKTFGRKKTLRQHLRIHENDRRFKCNHCNQGYVQKRDWKRHMFSVHGTEEVDCKNEVSKIGDEEVDTEEQIEMKKHAHNLKEILLCSNATPIGPSHIDGFKCVFCKTKCEDLPKLKNHAKEHPDVKKETFAQKREHSNEGMSKRKGKDILTREMLENDKVSEKVKLKIEREKHYNNIRQVLACSNATAIRTQSDGFYICCFCDDMFPEPAELKEHNIQQHTGEDIKRATFLRRTHLNNLHVKMDITGLQCNLCKQDFDNLEPLMEHLKAIHDKAVYTDINSRMIPFKFTPGAEKELLTCFMCFNVFNKLKTLFNHMNTHYRNFICEICDAGFITKTMAVEHGNTHMNGTFECNFCPEVFPTRLKKTNHERFRHPQGEGLNVCRICEKRFKSYFQKELHLKEVHGVGADAKCQACEKVFNSQKKLRYHIRIHHLMDRKYKCTMCDAAYFTSIQLTEHNVKHTGIKPYQCDICQRAYPRKKSLLRHVKTAHMDVNTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -