Scos035871.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463319.1:1282581-1286419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0054 0.59 11.9 1.2 1 23 175 197 175 197 0.97 2 17 0.0019 0.21 13.4 4.0 1 23 202 225 202 225 0.97 3 17 0.053 5.8 8.8 3.5 2 20 272 290 271 291 0.94 4 17 5.6 6.1e+02 2.4 4.4 1 15 322 336 322 345 0.80 5 17 2e-05 0.0022 19.6 0.9 1 23 351 374 351 374 0.95 6 17 9.5e-05 0.01 17.5 2.7 1 23 402 424 402 424 0.99 7 17 2.1e-05 0.0022 19.6 1.1 2 23 430 452 429 452 0.95 8 17 0.00032 0.034 15.8 0.6 1 23 463 485 463 485 0.98 9 17 0.03 3.2 9.6 6.8 1 23 491 513 491 513 0.98 10 17 0.5 55 5.7 4.7 3 23 521 540 520 541 0.95 11 17 0.0037 0.41 12.4 0.1 2 23 552 573 551 573 0.94 12 17 5.9 6.5e+02 2.4 0.5 2 23 578 598 578 598 0.92 13 17 0.004 0.44 12.3 3.0 2 23 607 628 607 629 0.95 14 17 0.00013 0.014 17.1 0.9 1 23 635 657 635 657 0.98 15 17 0.0009 0.098 14.4 3.1 1 23 664 686 664 686 0.97 16 17 0.27 30 6.6 1.5 1 23 692 715 692 715 0.92 17 17 0.0045 0.49 12.2 2.6 1 20 720 739 720 743 0.91
Sequence Information
- Coding Sequence
- ATGGATACTGCAAGTCCAAAAACTAAGCTCTGGAAGGATAATATAGAAAAACTGCTGTATAAAAACAATGTTTGTGGCGTATGCTTAACAGAAAGCGAAGATTTGGACAGTTTAAACACAATTTATCACTCGGAAGATAGTAAAGATAGGAGCCTGAAGGATATTATAGGTTTTACTTTTGGCGCTCATataCCAAATTTGATGCCAACTGATTATATCTGCAAACCATGTGTTACTACAATACTCCAGTCTTACTTCAACATCAAGAAAATCAGATCCAACTACATCGTCCTTCAGAAATACATCAACATCTTGACACAACAGGCCTTACTCAGTTCCATAACTGAACAACCTGTTGAAAAACAACTATTATTAACGATAGATAACGTGAACAGTCTTAATGTTCCTACAACGGTCACAGtaactaagaaaaagaaagataataatatcACTCAGATATTTTTATGTGAAGTTGATGCTTCGGACACTACAGAATCAGATTTTGAGAATGTCTATGTAAAGTATGAATGCCCGTACTGTGGTAAACAGTCCCATGATTATGTACTATTCAAAGAACATCTTTCTCTTCACAATGACATTTATTTCAGGTGCCATAAATGTGGAACACGGTATAAATATTTCAACGATTTGATTGAACACAGAAATATAAAACATGGTGACAGTTTGACCGTTTGCGAAGTTTgccaaattattttgttaagtcCAGAGAGCACTGAACATGAAACAAATCATTCAAATAATACTTGTGTGTATGAGTCGGAGACACATAACGCCGAAAAGCATTCATATGTGTCGTGCGAGAAATGTTTAAAAAGTTTCAGCAATAGTTTAAAATTAGAACACCACAGATGTCCTTACAAGTGCTCTGAGTGCAAAGAGGACTGTctacatgaaaaatatttagacTCCTACAAAGAACAACATCAATCTAAATTAATAGTCTTTAAATGTCCCGATTGTGACTTTCTATATTCCACAAAATGCCAGATAGTTTGTCATGTGAATGAAAAACACTTAAACTACCTGCCTTACTTATGTGATTTATGTGGAGAAAGCTTCGCATCTCGTCCACATTTGACTTCACATATGTCTAAAAACCATGCTGATGAGTTTCAAGTGTTTGAGGAACGGACAGTCAAAGTTGAAGGCCCTATTGTATCCAGTGTATTAAGTGAGAGGCCGTATGAATGTGATTTATGTGGATATTGCTTTAACTCTGAAGAAAGTTATGTGACACACAGGAGAAAGCATTTGACTGATGAAACGCAGTGCCACATCTGTAAAAAAGTGTTCCGTAGTATAGGCCAGCTAAACATTCATATTAAAGGAAATCATCCAGATGAAATCACAATCAGAAACATCAGTTACCGTTGCAGCATGTGCCCGTTAGATTTTAAATTGAGAACAGATCTATTGAGACATATTTCATCACATCCTAAAGACACTCCTCATACTTGCAGACAATGTGATGCATGTTTCTCGTCCAAGAAACGTTATATTTCCCATGTACGGAAACATAAAATCAAGTACGAGAAGCTGTGTccgatttgttttaaaaaatacactaaacaTACAATTTCAAGGCATATAAAGCTGCATCATGGTGGAGAAGAGACCAGAGAAACAACTTGCATGTGTGACGTTTGCGGCAAAGTTCTACCAACCGAGATTGATCTTATAAAACACGCTGGCACACACACAGAGGAGCGTCAGTGTCCGCACTGCCTTTTACCTGTGAACAGTGTTCTATATTCAAAACATGTCAGCACACATGTACAAAGCATTAAACAATTACGTGAATGCTCCGAATGCAACTATTCTACTAAATTTGCTGTTTGCTTAGAAGCTCACATGAATCGCCATCATCTTAAAGTGCGTCCTTATGTGTGTGACATTTGCAATAAGACTTTCTACTCGGACTATACATTAAAAGGACACAAAGCAACTCACAAAGATGTCCGTCCGGAGCATTATTGTGATATGTGTGGTAAAAAATTCATAAGTAAAAAAGCTTTGACTTTCCATACTAGGATCCATACTGGGGAACAGCCGTATCCTTGTCATTTGTGCGATTTGAGCTTTCTATCGGCAAGCCGTAGAACACAGCATTTGATTAGGAAACATAATGAGCCCCAGTTTGAATGCCAGGTATGTTTCAAGAAGTTATATACTCAGAGCGACCTGCGAAGGCATGTGGGAGACTGCCACGACGGAGAAACCAAAAGGAAAAGGCCTAAAAAAGAAGAACAGCTTATCGGAACCTGA
- Protein Sequence
- MDTASPKTKLWKDNIEKLLYKNNVCGVCLTESEDLDSLNTIYHSEDSKDRSLKDIIGFTFGAHIPNLMPTDYICKPCVTTILQSYFNIKKIRSNYIVLQKYINILTQQALLSSITEQPVEKQLLLTIDNVNSLNVPTTVTVTKKKKDNNITQIFLCEVDASDTTESDFENVYVKYECPYCGKQSHDYVLFKEHLSLHNDIYFRCHKCGTRYKYFNDLIEHRNIKHGDSLTVCEVCQIILLSPESTEHETNHSNNTCVYESETHNAEKHSYVSCEKCLKSFSNSLKLEHHRCPYKCSECKEDCLHEKYLDSYKEQHQSKLIVFKCPDCDFLYSTKCQIVCHVNEKHLNYLPYLCDLCGESFASRPHLTSHMSKNHADEFQVFEERTVKVEGPIVSSVLSERPYECDLCGYCFNSEESYVTHRRKHLTDETQCHICKKVFRSIGQLNIHIKGNHPDEITIRNISYRCSMCPLDFKLRTDLLRHISSHPKDTPHTCRQCDACFSSKKRYISHVRKHKIKYEKLCPICFKKYTKHTISRHIKLHHGGEETRETTCMCDVCGKVLPTEIDLIKHAGTHTEERQCPHCLLPVNSVLYSKHVSTHVQSIKQLRECSECNYSTKFAVCLEAHMNRHHLKVRPYVCDICNKTFYSDYTLKGHKATHKDVRPEHYCDMCGKKFISKKALTFHTRIHTGEQPYPCHLCDLSFLSASRRTQHLIRKHNEPQFECQVCFKKLYTQSDLRRHVGDCHDGETKRKRPKKEEQLIGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -