Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463322.1:3279069-3308379[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6 2.9e+02 3.5 0.8 1 23 250 273 250 273 0.77

2 15 6.6 7.2e+02 2.2 0.0 3 21 280 298 278 299 0.90

3 15 0.0014 0.15 13.8 2.3 1 21 522 542 522 543 0.94

4 15 0.0052 0.56 12.0 1.5 1 23 594 616 594 616 0.97

5 15 0.0057 0.62 11.9 3.1 1 23 622 645 622 645 0.97

6 15 0.0001 0.011 17.4 0.2 1 23 650 673 650 673 0.97

7 15 0.0001 0.011 17.4 0.2 1 23 719 742 719 742 0.97

8 15 0.0001 0.011 17.4 0.2 1 23 788 811 788 811 0.97

9 15 0.0001 0.011 17.4 0.2 1 23 857 880 857 880 0.97

10 15 0.0001 0.011 17.4 0.2 1 23 926 949 926 949 0.97

11 15 0.0001 0.011 17.4 0.2 1 23 995 1018 995 1018 0.97

12 15 0.00069 0.075 14.7 2.5 1 23 1024 1047 1024 1047 0.95

13 15 0.0072 0.78 11.6 2.6 2 23 1103 1125 1102 1125 0.95

14 15 0.12 13 7.7 4.1 1 23 1221 1244 1221 1244 0.96

15 15 5.8 6.4e+02 2.4 2.3 1 23 1251 1272 1251 1272 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6	2.9e+02	3.5	0.8	1	23	250	273	250	273	0.77
2	15	6.6	7.2e+02	2.2	0.0	3	21	280	298	278	299	0.90
3	15	0.0014	0.15	13.8	2.3	1	21	522	542	522	543	0.94
4	15	0.0052	0.56	12.0	1.5	1	23	594	616	594	616	0.97
5	15	0.0057	0.62	11.9	3.1	1	23	622	645	622	645	0.97
6	15	0.0001	0.011	17.4	0.2	1	23	650	673	650	673	0.97
7	15	0.0001	0.011	17.4	0.2	1	23	719	742	719	742	0.97
8	15	0.0001	0.011	17.4	0.2	1	23	788	811	788	811	0.97
9	15	0.0001	0.011	17.4	0.2	1	23	857	880	857	880	0.97
10	15	0.0001	0.011	17.4	0.2	1	23	926	949	926	949	0.97
11	15	0.0001	0.011	17.4	0.2	1	23	995	1018	995	1018	0.97
12	15	0.00069	0.075	14.7	2.5	1	23	1024	1047	1024	1047	0.95
13	15	0.0072	0.78	11.6	2.6	2	23	1103	1125	1102	1125	0.95
14	15	0.12	13	7.7	4.1	1	23	1221	1244	1221	1244	0.96
15	15	5.8	6.4e+02	2.4	2.3	1	23	1251	1272	1251	1272	0.86

Sequence Information

Coding Sequence: ATGGAATCTTCAGTAGCTCGACATAGTGAAGGTGATGACGAAGAAGAAGGAATATATTTTCTCATTGTAGATAACCAAACCGACGAACAACCTAAAAACATAGaTGATGAAAATTCTCAGCTATCAATAAAAAGTATTCACATAAAACAAGAAAACACAGAGAATAATGATATAATAAACCccaaagatataaaaaaagaagatgAGTTTGAAGGTATGATAGAAGAATACATTTCGGACGAAACATATGTGACTTCAGATGAAGACGAGAAAAAAAACACCATCGAGATGAAACctgtaaaaaaattacctcAAAAGAAGAATACcgttaagaaaaaatatataaaaaagaaacctcAAAAGAGGAGCACCGTTAAGaagaaagatataaaaaaaatacctcaaaAGAGGAACACCGTTAAGaagaaagatataaaaaaattacctggAAAGGAGAAGAATTCTGAGATTAAGaagaaagatataaaaaaattacctcaaAAGGAGAAGAATTCCGAGATTAAGaagaaagatataaaaaaaatacctgaaaagGAGAAGAATTCTGAGATTCGCAGAAGAATGTTACTACCCAAAGATAAGCACAAGTCTTTCGTGGATCAGCTTCGCATGTCAAACCCCGATTTCAACGATGAGAAAGCCTTGATATTGCAGCTGTGTAAGATAATGAAGGACACAAAGCCACCGCCACCTCCAACTGATTTCATGATTGAAACAGACTGCGGTTACGAATGTAACGAGTGTGGACACACAGCGGAACGTGTTCTGATGATAACCCATCATTGGCAAGAGAGGCACGGAACACGATACCTCAACTGCCTAGCCTGCGGAGCCGATTTCAGATGGGCCTCCAATTTGTACAAACACGAAAGGGCGTGCAATGCTTCCGATATCATATTAGTGCGAAAGGCCCGCAATCGTGTCAAACAacccaaaaataaaaaggtcGCGGCTAAAACAGGTCGGCCTTCAGAACAAGGCTTACTTGTAGAAATTaaagaagaagacaaaaaacctaaaaaaggtcggaAACGCAAAGCTAACACAAAAGAGAGCAAAGCAAAAACCACGTCTGTAAAGAAACCAAAACTTGCTATACGCGATTTAGTGGAAGATGCTGAAGAAGTCAGTGACAGTGATATGTCTCTTGAAGTTCCTGTGTTTGGAGACTCAGGCACCGACTCTGATTATAAAGCTTCTGGCGCAGAGGATAGTGATAGTGACTTCGATGAGCCCCTAGTGAAACTTAAACCGAAGCCAAAAAGACAAAGAGGTATACCTCGAAGATCACCAATCAAAGAGACGCAGCAGCCGGCTTATCTGAGCGAACTACGTAGAGACAAACCAGAACTATACAAAGACAAAGAACTATTAGTTAAAGTTCTGACCGAGATAATGGCTAAAGAGAAACCGCCGGTTCCACCAGATGATTTCGCCATTTTGAATCAAGATGCTGTATATGAatGTTCCAAGTGCAAGTTTAAGGACAAGTCCCGGCTGGCGATGGCGCGGCACTGGCAGTACCTACACGGTCCGCGGTACTACAAGTGCTACGCTTGCGGGTTCTGTTTCAGAAATCCGGGCAACCTTTACCGTCACGAGAAGCGTTGCACGTCCGAAGACACATACATAGTGCTGCGAGCGCGCGCCAGGTCCATCGTGTGGAACGGACGCAACAACCGGCCCTTCCTAGACGAGACCCTGAACAAAGTGGCCAAGAAACCAGCTCGTAAGAAACGGAACAAGAAGACAGGCGACTACATCTGCAGGTATTGCCCGCGCGAGTTCAAAAATATCCATTCGTTGGACTCACACGAAAACATGCACAAACTGGAACGCCCGTACCAGTGTGAACAGTGCCCAATGAACTACCACAACAAGGCTTCACTCTATAAACACAGGCGTGAAAAACACAGGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGTGAGTGCTCCATTCTACATATCGGCTAAACACAGGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGGTGGGTCGCTACCAGTGCGGCcagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGTGAGTGCTGCATTCTACATATCGGCTAAACACAGGATGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGGTGGGTCGCTACCAGTGCGGCGAGTGTGACGGCGAGTTCACAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGTGAGTGCTGCATTCTACATATCGGCTAAACACAGGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGGTGGGTCGCTACCAGTGCGGCcagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGTGAGTGCTCCATTCTACATATCGGCAAAACACAGGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACGTGAGTGCTCCATTCTATATATCGGCTAAACACAGGGTGGGTCGCTACCAGTGCGGcgagtgtgacagcgagttcacAACCAACGCCGCGCTTAGGAGTCACATGGACTCGCGGCATTTACCCCACAAAAAGTTCATCTGTCCCCATTGTGACAAGCGCTACGCACACACAACCGACTTGAAGATACATGTGGACAAACAACATCTCAAACTACCCCCGCCCTGCGCCTGCAAACTGTGCCCCAAACGGATGTATGTGGACAAACAACATCTCAAACTACCCCCGCCCTGCGCCTGCAAACTGTGCCCCAAACGAATCAACTTGAAGATTCATGTGGACAAACAATATCTCAAACTACCCCCGCCCTGCGCCTGCAAAATGTGCCCCAAACGATATCCTAAGATGACGTTGCTGAAACAGCATATGTTGAAGCAGCATGGAGTGCACATTTTCAGTCGAAGGATGCTGCAAAGAAACATGCCCAACATATCCAAAGAACTACTTGAAAACGCTATCGTTGTCAAGAAATCGGAATTAATTGTTCCACCCGaccaaaataattcaaatacaaCTGAATtgaatattcaaaataattcaaatacatcggaaaatacacaaaataatgaaattaaggcTAAAGTGATAATATATGATGAAGAACTTCCCGGAGAGGAGACAAATGATTGGAAAGCACCAAAGGATAGCGCaggAACACCCAAAAAGTTCGAGTGCCCGGATTGCGAAAAACAGTATGTGTGCAAGAATGACCTCAGACACCACTTCAATAGAGTCCATCTGAACCTGCCGCAGCCATTCCCCTGCAGTATGTGCGACAAACGTTGTATGAAGATGTTAAAGGGACACATGTTGAAGGCACACGGAATGGCACTCATTCCTCGGAAGAAAGTCCGCAAAACACTATCAAAATTATCTGAAGAGCAACTCAAAAGTATTACCATTGTCAAGAAATCGGACATGCAAACAGACCAACTGATAGAAACTGTCTCTATAGATGTAGGTAGAAGAAAATCTATAGATGTAGGTAGAAGGAATAACACTGAAGAAACACACTTTGAAGAAAATgatgatataaataattatgaaatccCAGAGGCAATTCAAGAAACATGCGTAGAAACAAGCTCACTGAATGAAGAAATGTATACATCACACAATGAAGGTTTAGAAGATGAGGGAATAACAGAAAATATAGAAGAATATGAAGAAGATTatcttgaagaagaagaagtggtcgAAGAAGTGGTTGAAGAAGTAGTAGAAGAAATAGTAGtagaagaacaagaagaagaagaggaagaagaagatcaggAGCCACCGCAGGATCTTCTAGAAATTGTCAAAAAGCACGAAAATGAAAGTGAAGAAAAGAAACCAATGCTGATCATAAAAGATGGACAAGCTGTGTTCATGGATGGTGACAGCGTAGGGTATTTCAAAAAGTCGAGtagaaattgtaaaataaaaacagaaaacaaaatatCTCCGACTAAAGATGACGTAAAGTATCAAGAAAATAAGACTCAAGATAAAATAGCCATATCTCCGACTAAAGATGACGTAAAGTATCAAGAAAGTAAGACTCAAGATAAAATAGCCGTAGAGTATCAAGAAGATGTAGTGTCAGAGACGAATCAGGCATTACTACAATATTATGATAAGTTCTGCACTAAAGCCGCTGATGTGAAACCAACTAAAAAAGAAAGTCCCAAAAAAGCAGTAAGAATTATTTCCATACATAGAGCTAAGAAAAGAACTCCTAATTTAAACATAACTTCCATACAAGAAGTGAAAGTTGGCAAACGCAAGCGTGTTAAAAAAAGATATCCTAGCAGTGAATGGTCTTAA
Protein Sequence: MESSVARHSEGDDEEEGIYFLIVDNQTDEQPKNIDDENSQLSIKSIHIKQENTENNDIINPKDIKKEDEFEGMIEEYISDETYVTSDEDEKKNTIEMKPVKKLPQKKNTVKKKYIKKKPQKRSTVKKKDIKKIPQKRNTVKKKDIKKLPGKEKNSEIKKKDIKKLPQKEKNSEIKKKDIKKIPEKEKNSEIRRRMLLPKDKHKSFVDQLRMSNPDFNDEKALILQLCKIMKDTKPPPPPTDFMIETDCGYECNECGHTAERVLMITHHWQERHGTRYLNCLACGADFRWASNLYKHERACNASDIILVRKARNRVKQPKNKKVAAKTGRPSEQGLLVEIKEEDKKPKKGRKRKANTKESKAKTTSVKKPKLAIRDLVEDAEEVSDSDMSLEVPVFGDSGTDSDYKASGAEDSDSDFDEPLVKLKPKPKRQRGIPRRSPIKETQQPAYLSELRRDKPELYKDKELLVKVLTEIMAKEKPPVPPDDFAILNQDAVYECSKCKFKDKSRLAMARHWQYLHGPRYYKCYACGFCFRNPGNLYRHEKRCTSEDTYIVLRARARSIVWNGRNNRPFLDETLNKVAKKPARKKRNKKTGDYICRYCPREFKNIHSLDSHENMHKLERPYQCEQCPMNYHNKASLYKHRREKHRVGRYQCGECDSEFTTNAALRSHMDSRHLRWVATSAASVTASSQPTPRLGVTWTRGIYVSAPFYISAKHRVGRYQCGECDSEFTTNAALRSHMDSRHLRWVATSAASVTASSQPTPRLGVTWTRGIYVSAAFYISAKHRMGRYQCGECDSEFTTNAALRSHMDSRHLRWVATSAASVTASSQPTPRLGVTWTRGIYVSAAFYISAKHRVGRYQCGECDSEFTTNAALRSHMDSRHLRWVATSAASVTASSQPTPRLGVTWTRGIYVSAPFYISAKHRVGRYQCGECDSEFTTNAALRSHMDSRHLRWVATSAASVTASSQPTPRLGVTWTRGIYVSAPFYISAKHRVGRYQCGECDSEFTTNAALRSHMDSRHLPHKKFICPHCDKRYAHTTDLKIHVDKQHLKLPPPCACKLCPKRMYVDKQHLKLPPPCACKLCPKRINLKIHVDKQYLKLPPPCACKMCPKRYPKMTLLKQHMLKQHGVHIFSRRMLQRNMPNISKELLENAIVVKKSELIVPPDQNNSNTTELNIQNNSNTSENTQNNEIKAKVIIYDEELPGEETNDWKAPKDSAGTPKKFECPDCEKQYVCKNDLRHHFNRVHLNLPQPFPCSMCDKRCMKMLKGHMLKAHGMALIPRKKVRKTLSKLSEEQLKSITIVKKSDMQTDQLIETVSIDVGRRKSIDVGRRNNTEETHFEENDDINNYEIPEAIQETCVETSSLNEEMYTSHNEGLEDEGITENIEEYEEDYLEEEEVVEEVVEEVVEEIVVEEQEEEEEEEDQEPPQDLLEIVKKHENESEEKKPMLIIKDGQAVFMDGDSVGYFKKSSRNCKIKTENKISPTKDDVKYQENKTQDKIAISPTKDDVKYQESKTQDKIAVEYQEDVVSETNQALLQYYDKFCTKAADVKPTKKESPKKAVRIISIHRAKKRTPNLNITSIQEVKVGKRKRVKKRYPSSEWS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -