Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463321.1:6672168-6680311[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.029 3.2 9.6 0.7 2 23 33 55 32 55 0.93

2 14 0.0047 0.51 12.1 1.2 1 23 61 83 61 83 0.98

3 14 1.4 1.5e+02 4.3 5.8 1 23 89 111 89 111 0.97

4 14 0.017 1.8 10.4 0.0 1 21 116 136 116 137 0.95

5 14 3.2 3.5e+02 3.2 0.0 3 23 168 189 168 189 0.92

6 14 4.2 4.6e+02 2.8 0.2 2 23 196 217 195 217 0.89

7 14 0.25 27 6.7 0.3 2 23 224 244 224 244 0.95

8 14 1.4 1.5e+02 4.4 0.1 2 20 251 269 250 271 0.92

9 14 0.018 2 10.3 1.4 2 23 287 308 286 308 0.93

10 14 1.9e-06 0.0002 22.8 1.8 3 23 318 338 316 338 0.97

11 14 0.0024 0.26 13.0 2.2 3 23 345 365 344 365 0.98

12 14 3.8e-08 4.2e-06 28.1 0.7 1 23 371 393 371 393 0.98

13 14 2.7e-05 0.003 19.2 1.0 1 23 399 421 399 421 0.98

14 14 0.00051 0.056 15.2 4.2 1 23 427 450 427 450 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.029	3.2	9.6	0.7	2	23	33	55	32	55	0.93
2	14	0.0047	0.51	12.1	1.2	1	23	61	83	61	83	0.98
3	14	1.4	1.5e+02	4.3	5.8	1	23	89	111	89	111	0.97
4	14	0.017	1.8	10.4	0.0	1	21	116	136	116	137	0.95
5	14	3.2	3.5e+02	3.2	0.0	3	23	168	189	168	189	0.92
6	14	4.2	4.6e+02	2.8	0.2	2	23	196	217	195	217	0.89
7	14	0.25	27	6.7	0.3	2	23	224	244	224	244	0.95
8	14	1.4	1.5e+02	4.4	0.1	2	20	251	269	250	271	0.92
9	14	0.018	2	10.3	1.4	2	23	287	308	286	308	0.93
10	14	1.9e-06	0.0002	22.8	1.8	3	23	318	338	316	338	0.97
11	14	0.0024	0.26	13.0	2.2	3	23	345	365	344	365	0.98
12	14	3.8e-08	4.2e-06	28.1	0.7	1	23	371	393	371	393	0.98
13	14	2.7e-05	0.003	19.2	1.0	1	23	399	421	399	421	0.98
14	14	0.00051	0.056	15.2	4.2	1	23	427	450	427	450	0.97

Sequence Information

Coding Sequence: ATgccaaaaaatacatcaggaaaGAAGGAAgctataatagaaaataaaaataacttagatATTGAACCAAACTATAGCTGGACAGATTATGATTGGATATGTACACATTGTGATGCAAAATTCAAGTCTATGCAGGAAGTCCGAGACCATTCCAAAATAGTGCACACAATCTGTTTTGGCTTCCGATGCACGGATTGTGAAGAAATGTTTAACTATTTCAACCCCTTCATTGAACATTTGAAAAAGCATAAACCAAGTTTAAGatatttttgtcatttctgCAACCACAAATCACGCAATGTATCAGAAACAACCAGTCACATGGTCTCTCATTGGTCAACCTCTTATATTTGCACATTGTGTGGTGAAATGCTACCAAACGTGGCTGCTTTAGAGCGCCATAAAAGGGCATATAAGAAGGTTCCATTACCCCAGAGGTGCTATAAGAAAAAGCCTAAGAAAGTGATTGGGGATAAGACGTGGATGGAATATGAATGGGGATGTCAGGATTGCGGCCTCCTTGTTGATAGTATCGCCGGACTCCGCGCACATTCCCGCGACGTCCACAACAAATGCTTCTCCATGAAGTGTGCGGATTGCCACCTCGTGCTTGCTATCTACAAACAGTTCATCGAACATGTCACAGCGCATAGGGGGTGGCTTAAAAACTATTGTCCATACTGCGATACCCGACTTAACGAAAGAGACATGGAAAGCCACGTTTCCACCCACATATCTGGTCTCCAGAAACCCTGCTTTGGCTGTGGCGACATATTTCCTGATAGTCTGAGCCTAACTGAACATAAGATCCATTACAACTCGCCTAGGCTCAGGGGAGTTACTGATGACGAGAGTTTAACTTGTGGGGTCTGTCACAAGAAGTTCCCAAATGGGTTTCAGATGAGGAACCATAAAGTGATTCATTACGAGTCTCGCGAAAGAGACCAGATTTGCCACACGTGCGGCAAAGCGTTCTTCGACGCGAAAACCCTGACGAACCACATCAGGACCCACTCCAACAAGACTGAGGCCTGCGAGATTTGCCACAAGTCGTTCCTCACTAAGCAGAGACTGAAGgTGCACATTACAACACATCTGGAGCTAAAGCAGTTCGTTTGCAACGAATGCGGCAAGAAGTTTAGGAGGAAAAGCCAGTTGGTTTTGCACATGGCGTCTCACAGTGACGCCTTACCGTTCCAGTGTGGTGCTTGTGGGAAGAGATTCAGATTGCAAAGCTATTTGAAAATACACGAGAGACAACATACAGGCATAAGGCCATACACTTGCGAAGTCTGCAGCGAAACATTCAATCACTGGGGCAACTGCAACCGCCATATGCTTCGAAAGCACGGACTCTCACTCGCCAAGACTAAAATCACGGCGCAGGGCAAACTTGACATTAACAGGGAGACTGGAGAAGCGAAAAAGATCGATATTGCTGGTACCGTGTCGGATTGGTGTCAGGAAATGCTCAAGCCGAAAAAGCGCGGGCGAAAGAAGAAAGTATCGTGA
Protein Sequence: MPKNTSGKKEAIIENKNNLDIEPNYSWTDYDWICTHCDAKFKSMQEVRDHSKIVHTICFGFRCTDCEEMFNYFNPFIEHLKKHKPSLRYFCHFCNHKSRNVSETTSHMVSHWSTSYICTLCGEMLPNVAALERHKRAYKKVPLPQRCYKKKPKKVIGDKTWMEYEWGCQDCGLLVDSIAGLRAHSRDVHNKCFSMKCADCHLVLAIYKQFIEHVTAHRGWLKNYCPYCDTRLNERDMESHVSTHISGLQKPCFGCGDIFPDSLSLTEHKIHYNSPRLRGVTDDESLTCGVCHKKFPNGFQMRNHKVIHYESRERDQICHTCGKAFFDAKTLTNHIRTHSNKTEACEICHKSFLTKQRLKVHITTHLELKQFVCNECGKKFRRKSQLVLHMASHSDALPFQCGACGKRFRLQSYLKIHERQHTGIRPYTCEVCSETFNHWGNCNRHMLRKHGLSLAKTKITAQGKLDINRETGEAKKIDIAGTVSDWCQEMLKPKKRGRKKKVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -