Scos038198.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463322.1:8959341-8963672[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00014 0.016 16.9 1.5 1 23 149 172 149 172 0.95 2 10 0.00028 0.03 16.0 3.9 3 23 181 202 180 202 0.95 3 10 0.073 8 8.4 2.7 2 23 210 232 209 232 0.96 4 10 1.1e-05 0.0011 20.5 0.2 2 23 240 262 239 262 0.93 5 10 2.8e-06 0.0003 22.3 0.7 2 23 270 292 270 292 0.97 6 10 0.0037 0.41 12.4 6.0 1 23 298 321 298 321 0.93 7 10 5.9e-05 0.0064 18.1 0.5 2 23 329 350 328 350 0.97 8 10 0.0006 0.065 14.9 2.0 2 23 358 380 357 380 0.96 9 10 0.00014 0.015 16.9 3.9 2 23 387 409 386 409 0.96 10 10 1.6e-05 0.0017 19.9 4.7 1 23 419 441 419 441 0.97
Sequence Information
- Coding Sequence
- ATGACTGCACAACAAAAGCCTTTGAACATGGGGGCTCCAAAATCGGAACCAATGTTCTTCGGTCATCCGCAACTGGAAGCTTTACACCTGGCCCAACCACGGACATCTTTCTACCCTCCACCGTTGAAGACAGAACCTCCGTACTACAAGTCAGATCTATACATGGGGCCGAAAATGGAACCCTTGGTTACCATAGAGGAGAATCCCGACAATGCTCCGCTCAATTTCAACGAAAACTCGCAATCCGACTCTCAGAAGTCCGGCGAGGGACGCAGCGATAGCACAAAGCTTTTTGGAAAATCCAAGGATTTGAAGTATATCAGCGTCCACAATCCCGCTCTGACTGATGAACAGAGAACAATGTACGAATCTGTCCTCGCTACTTGGAAACCAGGGCAATTCACTCAACCGAAAGTAGAAAAGGTTCCGAGAGCATTAAGACGTTATATTTGTCCTAAATGCAGTAAAGAGTTTAAAAATTACCAAAACTTGTACTTGCATACAACGAGAGTGCATTCCACAGTCGACGCCGCTGTGGCTTGCAATCTATGCGATAAAACATTCAAGAATAAGCACTATTTGTACATGCATCGGATGAATAAACATTACTCTGAAACCGAGAAGAGTTACTGCCAGTTTTGTCTGCAAGAATTCCGCACCAGACGAGCTTTGCACATGCACGTTAAAAGAATTCATCCAACAACCTTGCCAGAGCTAAAATGCCCTGAATGCGATAAGCAATTCTCTGTACCGTACAAACTAAAATATCATATGAGCGCCGTGCATCGCACAGAGCAGGAAAGACCGAAGTGTCCGATATGTGACAAGGTGtacaaaaacaacttaaacCTTAGCCGTCATCTTCAATCCCAACATCAGGAATTACCTCGTCACCCGTGCGTCTTTTGCGACCAGACCTTCAAGTCGCGCCATCACATGAAACGCCACGTCTTAAACATCCATCCGCCACTAGAATCCAAAGTACAATGCCCGGAATGTTTCAAAGAGTTCAAAAACGACCAATACTTACGAGAGCACATGCAACTTCACTCCTCATTGGAGACTAAAGTCCAATGCGATCTTTGTGATAAGTTTTTCCACTCGCAACTGCGTCTCAAGAAGCACATAAAGATAGTTCATCCGACTAAACCCAAACTTCAATGTGACAAGTGTAAGAAGGAGTTCGCCCATGAGCATTACTTGAAGAGGCACGTGAATTCCGTGCATTTGGAGGTAGAAGAAAGCAAATATGAACATGAGTGCGACAAATGCGGGAAGAAGTTTAAAATGAAGAAATACCTGAACAACCACTTGATGCGGCACGAGCAGCAGCAGCTCAAGCGCGTCTCCCGCATCGTCAAGACGGTCATCGGCAAGAAGGGTGACCAGCCGCCAAGGAAACGTGGCCGTCCCAAGAAGGTGCAGAAGGAGATAGAGTTCATCAAGTGCGAGCCCGTGTCCAGCTCGGATGAGGACTCCGAGGATGATGAGACAGATTCCGAGTGA
- Protein Sequence
- MTAQQKPLNMGAPKSEPMFFGHPQLEALHLAQPRTSFYPPPLKTEPPYYKSDLYMGPKMEPLVTIEENPDNAPLNFNENSQSDSQKSGEGRSDSTKLFGKSKDLKYISVHNPALTDEQRTMYESVLATWKPGQFTQPKVEKVPRALRRYICPKCSKEFKNYQNLYLHTTRVHSTVDAAVACNLCDKTFKNKHYLYMHRMNKHYSETEKSYCQFCLQEFRTRRALHMHVKRIHPTTLPELKCPECDKQFSVPYKLKYHMSAVHRTEQERPKCPICDKVYKNNLNLSRHLQSQHQELPRHPCVFCDQTFKSRHHMKRHVLNIHPPLESKVQCPECFKEFKNDQYLREHMQLHSSLETKVQCDLCDKFFHSQLRLKKHIKIVHPTKPKLQCDKCKKEFAHEHYLKRHVNSVHLEVEESKYEHECDKCGKKFKMKKYLNNHLMRHEQQQLKRVSRIVKTVIGKKGDQPPRKRGRPKKVQKEIEFIKCEPVSSSDEDSEDDETDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -