Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463321.1:1131806-1182891[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.013 1.4 10.8 0.0 1 23 524 547 524 547 0.95

2 17 0.0035 0.38 12.5 2.1 1 21 620 640 620 641 0.95

3 17 0.053 5.8 8.8 3.8 2 23 681 702 680 702 0.95

4 17 0.00018 0.02 16.6 0.9 2 23 745 768 744 768 0.96

5 17 0.055 6 8.8 0.2 1 23 774 796 774 796 0.93

6 17 0.0032 0.35 12.6 3.3 1 23 802 824 802 824 0.98

7 17 0.32 35 6.4 0.1 2 20 835 853 834 855 0.92

8 17 0.022 2.4 10.0 0.3 1 23 933 955 933 955 0.97

9 17 3.1 3.3e+02 3.3 7.2 1 23 962 984 962 984 0.95

10 17 0.0021 0.22 13.2 1.8 1 23 1023 1046 1023 1046 0.95

11 17 0.0014 0.15 13.8 1.8 1 23 1053 1076 1053 1076 0.98

12 17 0.013 1.4 10.8 0.2 2 23 1099 1121 1098 1121 0.95

13 17 0.015 1.6 10.6 0.3 3 21 1168 1186 1167 1187 0.94

14 17 0.00018 0.019 16.6 0.5 1 23 1290 1312 1290 1312 0.98

15 17 0.0003 0.032 15.9 1.9 1 23 1327 1349 1327 1349 0.97

16 17 0.0001 0.011 17.4 0.1 1 23 1355 1377 1355 1377 0.97

17 17 0.00084 0.091 14.5 0.6 3 23 1385 1406 1383 1406 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.013	1.4	10.8	0.0	1	23	524	547	524	547	0.95
2	17	0.0035	0.38	12.5	2.1	1	21	620	640	620	641	0.95
3	17	0.053	5.8	8.8	3.8	2	23	681	702	680	702	0.95
4	17	0.00018	0.02	16.6	0.9	2	23	745	768	744	768	0.96
5	17	0.055	6	8.8	0.2	1	23	774	796	774	796	0.93
6	17	0.0032	0.35	12.6	3.3	1	23	802	824	802	824	0.98
7	17	0.32	35	6.4	0.1	2	20	835	853	834	855	0.92
8	17	0.022	2.4	10.0	0.3	1	23	933	955	933	955	0.97
9	17	3.1	3.3e+02	3.3	7.2	1	23	962	984	962	984	0.95
10	17	0.0021	0.22	13.2	1.8	1	23	1023	1046	1023	1046	0.95
11	17	0.0014	0.15	13.8	1.8	1	23	1053	1076	1053	1076	0.98
12	17	0.013	1.4	10.8	0.2	2	23	1099	1121	1098	1121	0.95
13	17	0.015	1.6	10.6	0.3	3	21	1168	1186	1167	1187	0.94
14	17	0.00018	0.019	16.6	0.5	1	23	1290	1312	1290	1312	0.98
15	17	0.0003	0.032	15.9	1.9	1	23	1327	1349	1327	1349	0.97
16	17	0.0001	0.011	17.4	0.1	1	23	1355	1377	1355	1377	0.97
17	17	0.00084	0.091	14.5	0.6	3	23	1385	1406	1383	1406	0.95

Sequence Information

Coding Sequence: ATGTCACTCTCGGAGGCTCCGCCGCTGGTGCTATGCTTGGAGAAAGCTGATGGACAGGAGGTGACTTTGCAGATCCAGCCTACAGATGACTTCCATACCTTCCTGATGAAGGCCAGATCGTTAGTCGGTTACGATGTCGACATAAACTCTGTAACGCAAAACCAACCAGTCAACCTTACCGATAATGTCTACCAATATCTGCTTAAAAACGAGCAATCTTTCGCATCAGACTTGAATAAGCCTATGCTGCCTACAGCTAATAATGAAGACTTGTATATCCTCGATGATGGTACTCAGATAAGAGCATCGCAAATACATTTTGATAATGAAGACCCACATGTTGACCTAACAGCAGAGAAAATACCATTTGTAAAATACAATGATGTTATTGACGATGTAGATATTGATGATAATATTGAAACTGAAAACAAACTGTATAATATAGTTGATAGTCCTGTAAGATATTCTAAAGATGTCAGCGGTGGTCTGGTTATACCGTTCAAAGTAGTCACTAACAATCCATTTCGGATGATGAATAATAATACTATGCAAACTGGATTTGAAGCGCAGTTTACCAAATATCTGGAAGTGAAACATCAAATCAAAACTTACGCGACTTTGAATACTGTTACTAACCGCAATAAATCACCGAGAAGTCTTATCAGAGATAATTATAAAAGCTATGACGATAATTATCAAAGGAATAATGACGATTATCCTCATTACACCAGAGAAGATATACTTAATATGTTCAAAGACGCTCCGGTTTCGTCTGCTCCTTGTGAAAACCAAAACCAAGGTTTATCTGAAAGAAGACGTCACGCTCGCAAAAGCGATCCCACCAGACTCGTACATAAGAACTTCAATAAACCAATTTCTTACATTGATGTCGACGGAGTTTTAATAGCAGAGTCTGAGAGTCAAAACTGCTTTATTTGTTCAAAATTTGTTGACAATAACCACGATAAATTGTATCTATTTGACAATGAAGACCAAAAGTTGCATAGGTCGTCGCCACAAAAGAAATTAGCGACACAGCTTAAAATTATCTGCGAACAATGTTTGGAAACGAACTTTAAGCCTTGTAGAAAAAGCCCTAACCAATCTTTGAACTCAGATGAGTTTTTAGTAATAAGAAACAATCAACAATACATAGTTCAAAAGATTAATAGCAATCTCACGTTCAATGATGGAAAGAATGAGGCAAAGGCTAAcgcagaaaataaaaattctaacCAAAATGGTGATACCGAAGTCAAAAATGAAACTGTTTTCGAAGGAGAAGGCATTGCACAGCCACAGGAGACAAATGATAATTCTACagtcaataatgataataaGGCAAACTCTAGCGATGTAGAAATAATCGAGAACGAGCCTGAGTTCGATGACATAGACAACTTGGAAGAGGCTGACGAGGAGGTTATAGAGTTCCTGGGCAAATACCAGTGCGATGACAGCGAAATCAAGGAGTTGAAGTGCAGGTTCTGTGAGATAATATTCTGCGAGATATCGGAAGTGATCGAACATGGAGATGTCCACAAACATGTGCTGGACGATGGCGACGTGTATCCGTGTCCTCTTTGCGATTACGGGTACGCGAACTTCAAATGGTTGAAGGGTCATCTAAACGCCGCCCACGGGAAGACCAAACGAATCAAGACGGAAGTACAATATGAGGACACGAAGCCAGACGAGGAACTAAAAAAAGAAACTCCTGATAACCAACAAGAGAGCCATTCATTGGAACCGAAGTTTGAAATAAAGATGGAAGTTAAACAAGAGGCTCTCGACAGCAGCGACGAAGAAATCTGGATCGTACAAGCGGCTGATGATACCGACaAACAAGCTGAGAAACATAAATGCGACAACTGCAGTCTGAAATTCTCCTCGGCGGAAACCCTATCAGCCCACATGTGCCGTCGCCGCGGGCGCAACAACAAGAAAAAGGACAGCGATACATTTGTACCTTCACAAGAGGACTTCATAAAGAGACCTCGCAAGAAGAGAGGCAAGGACAGCTCTGACCCGCAGCTGGTGACCTGTCACAACTGCAACGAATCGTTCACTTCCAAAGTCAGACTCAAGTTTCACATgCAATTCCACGAATCAACAAGCATGCTGGCACCAGACGGACAGTATATGTGCACAGACTGCGCGAACACTAAGTTCTCAACCGAGACAGCGCTTTTCGACCACGTGCACTTCCAGCATCACAAGCAGAGGAGATGGCACTGCCCTATCGCTGACTGCGGGAAAACTTTTTACCTCAGGGCCACGCTAACGAAACACAGCAGAACTCACACAGACACTCGACGCTATGTTTGCGGGACCTGCGGCAAACGGTTCTTAGATAAACAAACTTTGGATGAACATGGTGTTACTCACTTACGGATAAAACCCTTCCAATGCCACATCTGTCTGAAACAGCTGACTCGAAGGTCTCGTCTCCGAATGCACCTGCGAGCTCATGAGGAAGAGTTGTGTCCAAGGCTTGTGCTGGTCTGTGCTGTGTGCAGCCAAGCGTTTAGGGATCATAATGATGTGCAGGCACATGTAACCAGATCACCAGAATGCATAGAAGAATTCACCAACGAATTGAAGGAGGAAGAAGCTGTGACAGTCCAACTGTCGCCCACTAGTGGGCTGGTCAGACATACTGTGCAGATTGTTGaaTCGCCGAAACTAAGGAAGCGTATACCTCGTGAAGCGAGCAGCCAAGAGGCCAAGGAGTTACTAAGCACTGTACCGGACGCCGCGTTGCCTATCATAAGATGTGTGGAGATTGAGAAGGCTTTCCGATGTGAATATTGCGAAGACGTGTTCTACTCCGAAACGGGTCTGAACACGCACCGCGCGATCCACAAGGACGTGAAGAATCCATTCACCTGCCACATCTGTAAAGTCAGCTTCGCTACTTATTCCAGATGCACAACCCATAAAACCACACACGGCTTCTACAAACGCTCGCTCGCTGCTCGCAAGCAAGGGGACTCCGGCAAACAGGAGACGGGGCCTTCCTCTACGGGAATATTGGGATATGGAGACTTTCCAGTGGTGAAGCATTTCTTGTGCGAGGATTGTGGGCGTTCCTATTTGCACTGGACATACTTGCAAGTGCATCGCCGAATGAAGCACGCCAACGACAATTTATCCTATAAATGTACACAGTGTGACGTATCGTTTGTTAACACTTGGAGTCTGTCTTATCATAGAAAGAAGCAGCACGCTAAACCAGAAATGGAGGATGGGACTTCTGTTAATAAATTGAAGGAGAGGGAAGATTATAGgatacccTGCAGAGACTGTGACGAGGTGTTGCCAAACAAAACTGCTCTTTATAAACACAGGAAGAACAAACATAGCGATCTTTCTCTACGGATCAATAATAACAACAATAGTGATAATACTGTAAGTAATATTCTTGCGCCTCCCGCACGAGGCTCGAAGCGCACGCCCGCACCGCCCGGGCCATCGGGGACTCATTTAGCGAAGGCTGCTTGCGATAAATGTAGTCAGACTTTTAGTGATGTGGGCAGTCTGCATGCGCATTTGAACCGGTTGAGCCGTCTCAGTAGAAGACCAACGACGCTGATTCCTGAAGGCCGCCATCTGGAAGACACGACTGAAGAACCAGACCGACGACGGACCCCTGGATCGACGCAATCGACAGCGACGCCTGGACTCTCTCTACGTGTGTTTCGACGCTTTGGAGACGGACAACAAACCTACCTAAATGTCTTAAGAAGAAGTATCGAGGCTACGCAACTTTGGGAACTGCAGAATTGTCCAGAAGAGCAGAAGATCCACGGAATGGGAACCAACACGACCGTTGCGGTTATGACCGCTCACAGCCACGAACTAGACTTCCCGTGCGAAGTGTGCGCTCGAAGGTTCTGTTCGCGCGCGGAGCTGACCGCCCACGCGCGCTCCCACACCGCCCCCACTGCCCCCAGCGCCCCCAACGCCCCCAACGCGCACATGTGCAAGGAGTGCGGGCATGTGTTCAGGACCGGGTCCATGCTCACGGAACACGGGAGGGTGCATTCTGGAGAGAGGCCGTTTCCTTGTGATATATGCGGGGTTGCTTTTAGAAGATCGACAGCGATGCGCAACCACCGACTGATCCACTCGGGCGTGCGCGCGTGGGCCTGCGCGCGCTGCCCCAAGCGCTTCCGGATCCGCTCCGACCTCAGGACGCATCTGCGGCTGAAGCATCCCGCTAAACTGTTCGTTATAGAGGTGCAGGGATTGAACCCCACACCAGAAGAAGTGATGGAGCGTCTCACTGCGAACAACATTCCGCACGAAAAAGTCATTGAAATCACCAAAATGACTTTCCCTAAGAGCATGACAAGTATAATCCCTCACAGCGCACGCGCGCTCTCGATGTTGTCCCACGTGCCGCGGACGCAGGTCGCGTGTAGCAGGCAGACTGCGGAGAAGCCTTTTGAGTTGTACCAGCCGCTGGCGGCCCGGCGAGGCCGCGGCATCTCCAAGACGCCGCGCAAGCCGAAGATATTACAGCGAGGGGACGCGATTACTGCACAGTGCACGCCGGTCACTTACTCGCTTACTGTTCCTTCGAACATGGCTACTAGTCAGATGCAACAACAAATGCCGCAGACTTCTCAACAACAACTGCAGCAAGGCGCCCCCGCCCCCTCCCCGCGCCCCCCCGCGCCCTACCCCATAGCGATGAGCGTCTCACAGGAGTTGCAACAACAAATGCCGCAAATATCCCTCCAACAACAACTGCAACTacccgcccccgccccgcccccGCACGCCCCCGCGCCCTACCCCATAGCGATGAGCGTGTCTCAGGAGGATTTAGCAGAGTTGAACGTTCAGCTGTTACTGAGAGACGGTGTGTTGGTCAATGGGAATCAAATGGTGCAATTACAACTCAACGATTTTATAACATGA
Protein Sequence: MSLSEAPPLVLCLEKADGQEVTLQIQPTDDFHTFLMKARSLVGYDVDINSVTQNQPVNLTDNVYQYLLKNEQSFASDLNKPMLPTANNEDLYILDDGTQIRASQIHFDNEDPHVDLTAEKIPFVKYNDVIDDVDIDDNIETENKLYNIVDSPVRYSKDVSGGLVIPFKVVTNNPFRMMNNNTMQTGFEAQFTKYLEVKHQIKTYATLNTVTNRNKSPRSLIRDNYKSYDDNYQRNNDDYPHYTREDILNMFKDAPVSSAPCENQNQGLSERRRHARKSDPTRLVHKNFNKPISYIDVDGVLIAESESQNCFICSKFVDNNHDKLYLFDNEDQKLHRSSPQKKLATQLKIICEQCLETNFKPCRKSPNQSLNSDEFLVIRNNQQYIVQKINSNLTFNDGKNEAKANAENKNSNQNGDTEVKNETVFEGEGIAQPQETNDNSTVNNDNKANSSDVEIIENEPEFDDIDNLEEADEEVIEFLGKYQCDDSEIKELKCRFCEIIFCEISEVIEHGDVHKHVLDDGDVYPCPLCDYGYANFKWLKGHLNAAHGKTKRIKTEVQYEDTKPDEELKKETPDNQQESHSLEPKFEIKMEVKQEALDSSDEEIWIVQAADDTDKQAEKHKCDNCSLKFSSAETLSAHMCRRRGRNNKKKDSDTFVPSQEDFIKRPRKKRGKDSSDPQLVTCHNCNESFTSKVRLKFHMQFHESTSMLAPDGQYMCTDCANTKFSTETALFDHVHFQHHKQRRWHCPIADCGKTFYLRATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLRIKPFQCHICLKQLTRRSRLRMHLRAHEEELCPRLVLVCAVCSQAFRDHNDVQAHVTRSPECIEEFTNELKEEEAVTVQLSPTSGLVRHTVQIVESPKLRKRIPREASSQEAKELLSTVPDAALPIIRCVEIEKAFRCEYCEDVFYSETGLNTHRAIHKDVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLAARKQGDSGKQETGPSSTGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDNLSYKCTQCDVSFVNTWSLSYHRKKQHAKPEMEDGTSVNKLKEREDYRIPCRDCDEVLPNKTALYKHRKNKHSDLSLRINNNNNSDNTVSNILAPPARGSKRTPAPPGPSGTHLAKAACDKCSQTFSDVGSLHAHLNRLSRLSRRPTTLIPEGRHLEDTTEEPDRRRTPGSTQSTATPGLSLRVFRRFGDGQQTYLNVLRRSIEATQLWELQNCPEEQKIHGMGTNTTVAVMTAHSHELDFPCEVCARRFCSRAELTAHARSHTAPTAPSAPNAPNAHMCKECGHVFRTGSMLTEHGRVHSGERPFPCDICGVAFRRSTAMRNHRLIHSGVRAWACARCPKRFRIRSDLRTHLRLKHPAKLFVIEVQGLNPTPEEVMERLTANNIPHEKVIEITKMTFPKSMTSIIPHSARALSMLSHVPRTQVACSRQTAEKPFELYQPLAARRGRGISKTPRKPKILQRGDAITAQCTPVTYSLTVPSNMATSQMQQQMPQTSQQQLQQGAPAPSPRPPAPYPIAMSVSQELQQQMPQISLQQQLQLPAPAPPPHAPAPYPIAMSVSQEDLAELNVQLLLRDGVLVNGNQMVQLQLNDFIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -