Scos031297.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- zfy1
- Assembly
- GCA_949820665.1
- Location
- OX463314.1:11620446-11630383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00029 0.031 15.9 2.9 2 23 73 95 72 95 0.94 2 12 0.023 2.5 10.0 0.6 2 23 103 125 102 125 0.92 3 12 2.4e-05 0.0027 19.3 1.5 1 20 130 149 130 151 0.96 4 12 3.4e-07 3.7e-05 25.2 0.2 1 23 162 185 162 185 0.97 5 12 0.0072 0.78 11.5 5.0 1 23 191 214 191 214 0.97 6 12 0.00089 0.096 14.4 0.3 1 23 221 243 221 243 0.98 7 12 0.032 3.5 9.5 0.2 1 23 248 270 248 270 0.97 8 12 3e-05 0.0032 19.0 0.8 1 23 276 299 276 299 0.94 9 12 0.001 0.11 14.2 0.9 3 23 305 326 304 326 0.95 10 12 0.08 8.7 8.3 1.8 3 23 333 358 331 358 0.86 11 12 0.0005 0.055 15.2 0.1 1 23 364 386 364 386 0.96 12 12 5.5 6e+02 2.5 0.1 3 23 394 417 393 417 0.77
Sequence Information
- Coding Sequence
- ATGCCGCCGAAACGCAAAAAAAATGGCAGGGGGCAAGGAATCAGAAAGAGGAAGACCAGATCGAATGTTCAACTTAGTGGTATAGTCAAGAAGGAGGAGCAGCCAGATCTGGACGAAATAGAGGAATGTGTTGAGCCTGAACCAGACTATGTAGTGACAGCAGATGCAGCAACAAAAATAGAGACTCTGGTGGTTGCTGTTAAAAAGTCAAGCATTTCCTGCAAAGAATGCAACAAAAAGTTCCGATTCAAGAACAGCTTCAAGCAGCATTTATTAAACGAGCATTCCAAGTTGCCTACGAGTGTGGAATGTGAAAAATGTCCAGTCCGATGCCCCAACAAGGAAAAGCTGAAAGAACATGTCACAAATATTCATGAGCGGGAGATGTACAAGTGCCCGCAATGTAAGAAGACTTTTGTGAGACATGCTCATGTGTTACGTCACATGGCCCAGATGGGCTGCAATGGGCTTAAAACTAAATTGTATCCCTGTGAGATTTGTGGTGCTAAGTTCAGCAGGAAAGACAACTTGATGGTGCACCTCCGTCAGCAGCACATTCTGCGGAAGAAGTATGCATGCAAGCAATGCAATTACAGCACATCTACATTCTCTAAACTGTGTGTCCATCGGAATAAAAACCATTtggAAACGAAGCAAAATTACGAGTGCGACCACTGCAGCAAAGTGGTGACGTCTCGTCCTGCCATGGTCAAGCATCTCGAAATACATGGGGAAAAGAAATTTGCCTGCGATGTgTGCGGCTACAGTACATTCACTATCGAGGTAATGCGTCGCCATGTTCTGACTCACGTCGAAGAGAAACCGTACAAATGCGTGCAGTGTACGATGTCGTTCATACAACGGTCGCAGCTGCAACGGCACGTCCTCGCCAAACATACTGGGAACAGCGACTGCCTCGTCTGCCACACCACGTTGAAATCCAAATCAGAgctCATTAAACACATAAATGAAGAACACGGTGTACAAGATCTAATGTGTCCGTTCAAAACGTGCGATCACTTCAAGAAACCGTTTAGCACCGCGAAGGCCTTTAAGATACACATGAACAACCATGACGGAGATAGGCCTTACGCTTGTGAGGTGTGCGGCAAGGCCTATCGCAATATGTTGGATATGAAGCGGCACGTCGCTTCACACACGCTGGAGCGACCAAGGCGCTGCATGTATTGCGTACAGCCGCGCGCGTACGTCCGCGGCATCCAGCTAGTGCGTCACGTGCGCAAGGCGCATCAGCAGGTCTTCCGGGAGCATCTCTTGCACGTGCGACAAGTGCTCGCGGACACAAAAACGACGAAATTCGCTCAGCAGCGCGTGAAGCAATCGGAGCTCGAGTCCATCTTGAACGTGCTGGACGCGGAGGCGGACCGCATCCTCGAGGGGTACGGGGAGGGGGTGCTGTACGGCGGCATGCAGGAGACAGGGCCCGACGCTATAGAGGTGGAGATAGCGACCACGCCTTTGAAGAAAGAGGACAACCCGTTAATGTCTGAAGAGGAGTTAGCAGAAAACCTGAACAAGTTGCTCGTACAGCTGATTGATAAGGAGCTGTTGGAGTGCTTCGGCTGGCCGCTTGAGACCGTCGACACTGTGTTAGAGAAAGTGATCGAGCACTGCGGCGCACGGCCCGCCGACCGCAACACGTGGACGCGCGTGCAGTGTTTACGAGAGAACGCCAAGCATCTGTTCCTACACGTGATTGAAGATAAGAACATCACGCGCATGCTCGACTCCCACACCATCGATCAGATCGTGAAGCATGTGCTCGCGCAGGTCAGCGAGGGGGATGAGGGGGAAGAGGAGTGA
- Protein Sequence
- MPPKRKKNGRGQGIRKRKTRSNVQLSGIVKKEEQPDLDEIEECVEPEPDYVVTADAATKIETLVVAVKKSSISCKECNKKFRFKNSFKQHLLNEHSKLPTSVECEKCPVRCPNKEKLKEHVTNIHEREMYKCPQCKKTFVRHAHVLRHMAQMGCNGLKTKLYPCEICGAKFSRKDNLMVHLRQQHILRKKYACKQCNYSTSTFSKLCVHRNKNHLETKQNYECDHCSKVVTSRPAMVKHLEIHGEKKFACDVCGYSTFTIEVMRRHVLTHVEEKPYKCVQCTMSFIQRSQLQRHVLAKHTGNSDCLVCHTTLKSKSELIKHINEEHGVQDLMCPFKTCDHFKKPFSTAKAFKIHMNNHDGDRPYACEVCGKAYRNMLDMKRHVASHTLERPRRCMYCVQPRAYVRGIQLVRHVRKAHQQVFREHLLHVRQVLADTKTTKFAQQRVKQSELESILNVLDAEADRILEGYGEGVLYGGMQETGPDAIEVEIATTPLKKEDNPLMSEEELAENLNKLLVQLIDKELLECFGWPLETVDTVLEKVIEHCGARPADRNTWTRVQCLRENAKHLFLHVIEDKNITRMLDSHTIDQIVKHVLAQVSEGDEGEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501426; iTF_00844659;
- 90% Identity
- -
- 80% Identity
- -