Scos038839.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463324.1:1871189-1874330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.89 97 5.0 0.4 1 23 107 130 107 131 0.90 2 18 6.7 7.3e+02 2.2 0.1 2 23 156 178 155 178 0.92 3 18 1.3 1.5e+02 4.4 3.6 2 23 201 222 200 222 0.96 4 18 0.0036 0.39 12.5 0.0 1 23 226 248 226 248 0.97 5 18 2.4 2.6e+02 3.6 2.5 1 23 253 276 253 276 0.85 6 18 0.029 3.1 9.7 0.6 1 23 282 305 282 305 0.93 7 18 0.11 12 7.9 4.0 5 23 315 334 312 334 0.94 8 18 0.00037 0.04 15.6 2.6 1 23 340 362 340 362 0.98 9 18 1.1e-06 0.00012 23.5 2.2 1 23 368 390 368 390 0.99 10 18 0.45 49 5.9 0.2 1 23 494 516 494 516 0.94 11 18 0.041 4.4 9.2 0.1 2 23 541 563 540 563 0.96 12 18 0.0094 1 11.2 0.0 1 23 611 633 611 633 0.97 13 18 1.2 1.3e+02 4.6 0.7 1 19 638 656 638 658 0.80 14 18 0.12 13 7.7 1.2 1 23 667 690 667 690 0.92 15 18 8.5e-06 0.00092 20.8 2.5 1 23 697 719 697 720 0.96 16 18 1.5e-05 0.0016 20.0 1.2 1 20 726 745 726 748 0.92 17 18 3.3e-07 3.6e-05 25.2 0.5 1 23 754 776 754 776 0.99 18 18 0.00012 0.013 17.1 4.3 1 23 782 805 782 805 0.98
Sequence Information
- Coding Sequence
- ATGGTCAAGGCAGAAGATGAAGAACAACCTAAAGGTGATATAGAATACGACGTCATAAATGACGGCAATGAAATATTCACTAATAAAACTGCAAAGAGAAAAAAATCAGCACGTACAAAAGATACAAAGAAATCATCGAAAACAAGAAAAGTAAAATCTAAAGATCTATCTGCACATCAAACTTCAAAGAAGAATTCGAAAAAGGGAGACTCAGATAAGTCTTTCAAAGGAGAGGATCTTATAAAATTGAGGGCAGCGGTAAGGGAGATCCTTGAAAGTTCAAATGCAACAGCGCTTCGTGGCCACGGAGGAGTTGGCTACGCGTGCTGCTTCTGCGATGACCAATACCCAGACCCAGCTGACCTGAAACAGCACAACCTACAGAACCACATACAACACATTCCAACATTCATGAAAGGGAAATACATCACCACATTCTACGCAAAAATGGACATAACATCTTTGCAATGCAACTTGTGTAGTGAAAATATGCCAACGATCGTAAAGTTAGTCGATCATCTAAATAGTATCCATAACAAGGTAATTTtcgaagatataaaaaaaagaatatttccgTTCAAGTTTGAAAACAAAGAGTTGCGATGTTGTGAGTGTGCTAGTACATTCCGCGCATTCAAGGCTTTGCAAGAACACATGCATTCTCATTACAAAAATTACGTCTGTGACATTTGCGGTGCCGGATTCATAATGAAAAACGCTCTGAGCGTTCACAGTGCAACGCATGAATCTGGATCGTTCAAATGTTTGCACTGTCCAAAAGTCTTAGATTCGATGTACAAAAAGAAGCTGCACGAGAAGTTTGTACATGTGTCCGATCTCAGATTTAAGTGCGCGTTTTGCGATCAAAGATTTAACAGAATCGGTGCTAAAGAGAAACATCAAACCGAAGCTCATGGAGTCGCCAGCGTCGAACACAAATGCCATTGCGGCAAAGTTCTAGGCAGCCGTTCGTCCTTGAGTTCTCATATCAAAAGAAACCATCTATCGCAGCGGATGCATCAATGTCCAGAATGTTCGATGGAGTTTTTTAGTCTATACGAGTTTAAGAACCACATGTTGAAACATACCGGCCAAAGGAACTTCAAATGCGAAGTTTGCCAAAAAGCGTTCGGTCGGCAGCATACTTTGAAAGAGCACATGCGTATACATTTGAATGATAGACGGTTTAAATGTAAGCCACAAGAAGCTATTCGACTCCGACCAATCCGGGAACTGGTCAAAACTGATGATATCAAAGAAGAAATTGATAAAGATATTCCTCACCATAAAGAAAGTGCAGCAAAGAAGAAATCTCAATTGAAGCCTGCATCTGAAAAGCCgactaaaaagaagaaaaaacctACAGATGAATCAGATATATTAGCCAGAATagtttatatgaataaaatgcgTGCGGCGGCTAAAGTAATTCTGGACAGTTCTAATGCTACAGCTATCCGCTGCGCCGGAGGAGCTGGCTATGCTTGCGTCTTCTGCAGGGAACAGTTTCTAGATCCTGCTGATTTGAAGAAGCATAATGCTAGCCACGAAGTCATGGACACTttcatgaaattcaaaaaccttACAAACTTCTACGTTAAAATGGATATAACTTCTTTAAAATGTAACCTCTGTAGTAAAGACATACCAAATATTAGTCAGCTGGTTGACCATCTTAACAAAGAtcataataaagaaataatagaTGATATCAAGAAACGAATATTCCCTTTTAAATTTGAAAGTAAAGAGCTGCGTTGCTGTGAGTGTCCCAGTAAATACCTAGCGTTTAGACCTCTGCAGGAACACATGCACTCGCATTACAGAAATTTTGTTTGTGACATTTGTGGAGCTGGGTTCATTATCAAAGGAGCGATGCGTACCCATAGAGGTACCCATGAGACAGGTTCGTTCAAATGTGCGCACTGCCCTAAAGTCCTAGACTccctaaataagaaaaaaatgcacGAAAAGTGTGTTCATGTATCTGATCTGCGATTTAAATGCGCCTTTTGTGACCAGAGGTTCAGCGTCATCCACGCAAGAGAGAAACACCAAACGGCCGTCCACGGTACTGAAAGCATTGAATACAAGTGCCAATCTTGTGGGAAAGTTCTAGCAAACCGTTCGTCCCTGCGCACGCACATTAAGAGACATCATTTACTGCAGCGGCTGCATCAGTGCCCCGAATGTGACATGAAGTTTTTCAGTCCTAGCGAGCTTCAGAAGCACATGCCAAAACATACCGGTCTCCGGAACTTCAAGTGTGATGTCTGTCCGAAGGCGTTTGGCCGACAGAAAACGCTGAAAGAACACATGCGTATACATTTGAATGATAGACGGTTCAAATGCGAGCATTGTGGACAGGCGTTCgtgcagaaatgcagctggagggGGCATATGCGATCAAAACATGGGGAAATGGTCTGA
- Protein Sequence
- MVKAEDEEQPKGDIEYDVINDGNEIFTNKTAKRKKSARTKDTKKSSKTRKVKSKDLSAHQTSKKNSKKGDSDKSFKGEDLIKLRAAVREILESSNATALRGHGGVGYACCFCDDQYPDPADLKQHNLQNHIQHIPTFMKGKYITTFYAKMDITSLQCNLCSENMPTIVKLVDHLNSIHNKVIFEDIKKRIFPFKFENKELRCCECASTFRAFKALQEHMHSHYKNYVCDICGAGFIMKNALSVHSATHESGSFKCLHCPKVLDSMYKKKLHEKFVHVSDLRFKCAFCDQRFNRIGAKEKHQTEAHGVASVEHKCHCGKVLGSRSSLSSHIKRNHLSQRMHQCPECSMEFFSLYEFKNHMLKHTGQRNFKCEVCQKAFGRQHTLKEHMRIHLNDRRFKCKPQEAIRLRPIRELVKTDDIKEEIDKDIPHHKESAAKKKSQLKPASEKPTKKKKKPTDESDILARIVYMNKMRAAAKVILDSSNATAIRCAGGAGYACVFCREQFLDPADLKKHNASHEVMDTFMKFKNLTNFYVKMDITSLKCNLCSKDIPNISQLVDHLNKDHNKEIIDDIKKRIFPFKFESKELRCCECPSKYLAFRPLQEHMHSHYRNFVCDICGAGFIIKGAMRTHRGTHETGSFKCAHCPKVLDSLNKKKMHEKCVHVSDLRFKCAFCDQRFSVIHAREKHQTAVHGTESIEYKCQSCGKVLANRSSLRTHIKRHHLLQRLHQCPECDMKFFSPSELQKHMPKHTGLRNFKCDVCPKAFGRQKTLKEHMRIHLNDRRFKCEHCGQAFVQKCSWRGHMRSKHGEMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -