Scos032248.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463315.1:8858394-8861503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.045 4.9 9.1 0.1 5 23 373 391 372 391 0.96 2 12 0.011 1.2 11.0 0.2 3 23 399 419 397 419 0.94 3 12 2.5 2.7e+02 3.6 0.5 2 23 428 449 427 449 0.88 4 12 1.1e-05 0.0012 20.4 0.5 2 23 455 476 455 476 0.97 5 12 0.018 2 10.3 3.8 1 23 482 504 482 504 0.98 6 12 0.00046 0.049 15.3 0.2 1 20 508 527 508 529 0.93 7 12 0.0005 0.054 15.2 0.1 1 23 562 585 562 585 0.95 8 12 0.0032 0.35 12.7 0.0 3 23 595 615 593 615 0.98 9 12 2.4e-05 0.0027 19.3 0.4 1 23 626 648 626 648 0.98 10 12 0.00011 0.012 17.3 3.4 1 23 654 676 654 676 0.98 11 12 0.0034 0.37 12.6 0.3 3 23 684 704 682 704 0.98 12 12 1.9e-05 0.0021 19.6 1.9 1 23 710 733 710 733 0.96
Sequence Information
- Coding Sequence
- ATGGATTCGTGGGCAAATCTATGTCGGTGCTGTTTGTCGCCGGACTCGGAGGTGTCTTTGCTGGACGAAGTTAATAACGTGAAGGAAAAATTCCTGGAGATCACTACCGTAGAGGTGTATGAGAGTGATGGACTACCGCAGAAGCTGTGCAACGATTGTTTTAGCATCATGACGTCGGCACATCAGTTCCGGAGGCAGTGCATCAAGATGGACACTGAACTTAAACTGCAACTCGAAGCCCTACTACAGCAGAATAATGAGGATGGGGAATTAGAAGAACAGGAGAGCCATGATGCTGCATCTGATGAGGACATTGCAAACAATCCAATGAAACAACTCGAAGCAATCATCAAAAAAGAACCTACAGATAGTGATGATGATTATTACTATGTTCTAGTCATTGATGATCCAAAAGACAAAGAAGAAGGCAAAGAAAAAGCTGCCGAAAATGAAACAATAGAATTAGACAATCAAGAAATTCCAAGTAATGTTAAAGTAGAAAGTAATGCAGATCACAATGAAGAAAATGAAACAATTCAAGAGAGTCAAGAAGAAACAAATCATGACAATCAACCAGGTGAGACATTTGAAAATTCATATGATTCATACCTCATGTCAAATACCAAAGTTCCAATAAATGTACCAGCTACAATCCTTGAGAATGAGGAGGAGAGTCAAGAAATCGATGAACAACACTTTGATCAAGGAATGGATGTTGATGAAACGCAAGATAGCAGTTCACAGGACCAAAATTATACTTTAACTCTAGATGGGCAAGATAAAGATATTGAGGAAGTAATAACAGGTGATTTAGAAGGTAATTTACAGttgcaagataaaaacataataaaaattctTACATCAACTGGAGCTAATGGAACTATTCTTCTGAAAGATAGCAATGGTATCCAATACCTTACCACTGACACACAGTTAGTCACAAGTACTGGCGAAGATGGGGATCCTTTGAATCAAGAAGAGGTTATCTTCTGTGAAGGTGATGATTCGTCCCAGTTCCAGATCCTCAAATGTGATGGCTCAGAGTTGGTCATAGAATATACTGACGGGGATCAAATAGCTACCGTTCTTCAGCAAGAAGATGGCACATTTTTATGTGATTGTGGTGAACAGTTTGAAGACCTGGGAGAGTATGAGAAACACCAATACAAACACAATCCTGCCGGTGAACATTTGTGCAACTTGTGTGGCAAAGGATTTGAAACAGCTGAGATCCTGACTGGACATATGCTCCTTCACAGTAGTGGCAACACCTCCCTCATCACTTGCCCGTTCTGCCAGCAACTGATAAGACGGAATGCATTGACACAGCATATCAAATACAGCCACAACAATGTCAAACCTGAATgcaatatttgtatgaaaacattTGCTAACCCGAACAACCTAAAACGGCACCAAATGATTCACTCAGGTGTAAGAGAATTTGAGTGTGACCTGTGCCTTAAACGTTTCCACCAAAAGATTACAATGCAAACCCATAGATTGACTCATTTGAATCATTTTGCCTGCAATCAATGTGACCAGACTTTTGAGAGCAAAACTGCCTTGCAGGCGCATAAAGACTCTGATAGTTGcagtaaatctaaaattaagaaGGTGAAAGATGAGTTAATGAAGACTGTCAAACAGAACATCACTACAAACCTTGGCAAGGTTTTAGGTTATGCATGCTCCTTGTGCAAAAAGATGTTCTCACTAGAATCGGCATTAGAACAGCATGTTGAAGTGACACACATGTTCCAAGATCCATCAGAATTGCTTTGTTCCGAATGTGGAGAAGTGTTACCTTCAAAGGAAGACATGCAGACCCATGTCTTGacgcataaaaattataaacataaacacaTGAAAAGGTTTGAGTGCAAGATTTGTGGTAAAGGTTGTTCGAGCCAAGCCATGTTAGTTATGCATGAAAGAGTCCATACAAACGAGCGTCCATTCCCTTGTGCCTTGTGCTCGTTGCGGTTCAAAACTAAGACTCATTTACGCACTCATCAACTCACTCATACTCGCGAGAAAAAGtttggttgttcagtttgcatGAAGTTCTTTGCCCTTAAGGGCAACTTAGTGGTTCACTTAAGGACGCACACAGGGGAACGCCCATACTCTTGCACGTTGTGTGGAGAGTCCTTCATAGATTCCAAATATCTGAAAAAGCATAAACTCAAGAAGCATGCTATCGAAAATGTTCCCTGGAACCAATATTag
- Protein Sequence
- MDSWANLCRCCLSPDSEVSLLDEVNNVKEKFLEITTVEVYESDGLPQKLCNDCFSIMTSAHQFRRQCIKMDTELKLQLEALLQQNNEDGELEEQESHDAASDEDIANNPMKQLEAIIKKEPTDSDDDYYYVLVIDDPKDKEEGKEKAAENETIELDNQEIPSNVKVESNADHNEENETIQESQEETNHDNQPGETFENSYDSYLMSNTKVPINVPATILENEEESQEIDEQHFDQGMDVDETQDSSSQDQNYTLTLDGQDKDIEEVITGDLEGNLQLQDKNIIKILTSTGANGTILLKDSNGIQYLTTDTQLVTSTGEDGDPLNQEEVIFCEGDDSSQFQILKCDGSELVIEYTDGDQIATVLQQEDGTFLCDCGEQFEDLGEYEKHQYKHNPAGEHLCNLCGKGFETAEILTGHMLLHSSGNTSLITCPFCQQLIRRNALTQHIKYSHNNVKPECNICMKTFANPNNLKRHQMIHSGVREFECDLCLKRFHQKITMQTHRLTHLNHFACNQCDQTFESKTALQAHKDSDSCSKSKIKKVKDELMKTVKQNITTNLGKVLGYACSLCKKMFSLESALEQHVEVTHMFQDPSELLCSECGEVLPSKEDMQTHVLTHKNYKHKHMKRFECKICGKGCSSQAMLVMHERVHTNERPFPCALCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYSCTLCGESFIDSKYLKKHKLKKHAIENVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844649;
- 90% Identity
- -
- 80% Identity
- -