Scos038236.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463322.1:9471020-9490051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.078 8.5 8.3 0.8 1 23 248 270 248 270 0.97 2 16 1.1 1.2e+02 4.6 3.3 1 23 277 300 277 300 0.86 3 16 0.67 73 5.3 0.9 2 23 324 345 323 345 0.93 4 16 0.0055 0.6 11.9 2.5 1 23 350 372 350 373 0.95 5 16 0.0061 0.67 11.8 0.6 2 23 377 399 376 399 0.94 6 16 0.0029 0.32 12.8 0.8 2 23 435 457 434 457 0.91 7 16 0.45 49 5.9 0.4 1 23 489 512 489 512 0.83 8 16 0.0021 0.23 13.2 0.3 2 17 519 534 518 535 0.93 9 16 0.0021 0.23 13.2 0.3 2 17 556 571 555 572 0.93 10 16 0.0021 0.23 13.2 0.3 2 17 593 608 592 609 0.93 11 16 0.0021 0.23 13.2 0.3 2 17 630 645 629 646 0.93 12 16 0.093 10 8.0 0.7 2 14 667 679 666 680 0.90 13 16 0.0021 0.23 13.2 0.3 2 17 704 719 703 720 0.93 14 16 9.1e-07 9.9e-05 23.8 0.6 2 23 741 762 740 762 0.96 15 16 1e-06 0.00011 23.6 2.2 1 23 768 790 768 790 0.99 16 16 7.5e-05 0.0081 17.8 2.7 1 23 796 819 796 819 0.98
Sequence Information
- Coding Sequence
- ATGAGCGTAAACATCTATAGAGGCGATCTCGAGGCCTGTAGAGTCTGCTTAGCTACCGATATCAAATTAATAAGTTTACAGGATAACCACTTGAAACACATCTATTCTGAGTTCAGTGGAGTGCCGATAATGAACCCAGACAATTTACCGCAGCATATGTGCATATTCTGCTGCGCATTGCTCAAGAAATGTTCAAAATTCAGGCAAAAGTGTAAAGATGCTTACAGTTTGTTGTCGGGCCATCTTCTAGAGATGCACGCTcTAACCACCTCATTTATTGATACTTTAGATAAAACACATCTCAAATTACCTCTTGCTACCACCAATATTCTTGAATGTCATTGTATACCTGAAGATACAGTTAAAAaaaaatatttaaagaagaaTGATGTCAAAACTGAAATTCCCGCATTCATCTCGGTTGATGATGAGAGCAAAGAAGACTTAAAATCAAGAGTGAAGGAATATGATGTTAGCATCAACCCAGAGAATGTTAACCAGAGGAGGTTTTATGAACACATCAACAACAAATACACCACAAGTAATATGTCTAAAGTACAGAAGAAAGTCAAAGATATTGGTCGGATGAAAGTGAAGAAAATCAAAAGAGGTAACATAACTAAGGAATCACTGGCACAAGTTTCCAAAGACTACAACGTTGATGTAAAACTCTTACTCAAAGGAGAGAAGATTCAGGATCTCCTGGATAGAAAAGAAACGGAGAAATACAAGAGGTCTAAATATAAGTGTGAAGTTTGCTACACAGGGTATGCGTTcgaaaaaacatttcaaaaccaTAAGGCGATACATGATCCGAGCTACGGTCCGTACGAATGCGACATTTGCCACGTGCGGTTCCGATGCACCAAACTGTGGAAGCGGCACGTGAGCGCGCAGCACCGGTACAAGCTCATCTGCCGACAGTGCGGGCAAGTGCTCCGGTCCAACGCGCAGCACCGGTACAAGCTTATCTGCCGACAGTGCGGACAAGTGCTCCGGTCCAACACGGCGGCGCGAGAACACCACCAGTTCCACTCGGGGCACAGCTACATCTGCGAGCACTGCGGGAGAATATTCGATAAGTACGCGACCCGCCTCAACCACGTGCGCATCCACCACGGCTCCGTGAGCTGTGACATCTGCCACATGAAGTTCACCAGCGAGGCGGGGCTCGTCACGCACAAGACCAAGGCGCACAAGGAGATGTTCAAGTGCGCGTGCTGCCTGGTGCTGTTCCACAACGGCATCGCGCTGCAGCGCCACCAGCAGCTGGCCGGCGCGCGCTGCGGGGCGCACATCAAGCCGTGCACGCAATGCGGTGAGAGCTGCCCCGACAGCGCGGCGCTCACGCAGCACATCGTGCACCAGCACGGCCACGAGAACAAGCGGCTCAAGCACATGCGGCAGATCAACACGTCGTTCGCGCGTCGTCGCCGCGAGGAGGGAGACAGCGGCCCGCTCACGTACATGTGTGAGATGTGCGCTAAGGACGACTTCAAATCGGAGGCTGCGCTGCGCTACCACCAGCGGAAGCACTCGGACGAGAGGCCGGTCGAGTGTGACGTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCTCCGGGTGAGCCCCCGTCCACAGGTCGGCTGGTCGGCTGGTAGAAACTGCTCGCGTGTTGAGCCGGTCGAGTGCGACGTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCTCCGGGTGAGCCCCCGTCCACAGGTCGGCTGGTCGGCTGGTAGAAACTGCTCGCGTGTTGAGCCGGTCGAGTGCGACGTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCTCCGGGTGAGCCCCCGTCCACAGGTCGGCTGGTCGGCTGGTAGAAACTGCTCGCGTGTTGAGCCGGTCGAGTGCGACGTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCTCCGGGTGAGCCCCCGTCCACAGGTCGGCTGGTCGGCTGGTAGAAACTGCTCGCGTGTTGAGCCGGTCGAGTGCGACCTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCCCCGGGTGAGCCCCCGTCCACAGGTCGGCTGGTCGGCTGGTAGAAACTGCTCGCGTGTTGAGCCGGTCGAGTGCGACGTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCTCCGGGTGAGCCCCCGTCCACAGGTCGGCTGGTCGGCTGGTAGAAACTGCTCGCGTGTTGAGCCGGTCGAGTGCGACGTGTGCAAGAAGAGCTTCAAGGACAAGTACCAGCTCCGGATCCACATGACGATTCACACGGACGAGCGCCGGTTCCAGTGTCCGCTCTGCGTCAAAGCGTTCCGTCAACAACAACACCTCACCACGCACATACGGTCCCACACGAACGAGAAGCCGTACTCGTGCGAGGTTTGCGAGAAGCAGTTCAAGCACAAGCGCTCCATGCAGGACCACGTGCGCACCGTGCACGACTGCCTACCCCCCAGGAAACGCGTCAGGCACAACGCGCCCGTGTAG
- Protein Sequence
- MSVNIYRGDLEACRVCLATDIKLISLQDNHLKHIYSEFSGVPIMNPDNLPQHMCIFCCALLKKCSKFRQKCKDAYSLLSGHLLEMHALTTSFIDTLDKTHLKLPLATTNILECHCIPEDTVKKKYLKKNDVKTEIPAFISVDDESKEDLKSRVKEYDVSINPENVNQRRFYEHINNKYTTSNMSKVQKKVKDIGRMKVKKIKRGNITKESLAQVSKDYNVDVKLLLKGEKIQDLLDRKETEKYKRSKYKCEVCYTGYAFEKTFQNHKAIHDPSYGPYECDICHVRFRCTKLWKRHVSAQHRYKLICRQCGQVLRSNAQHRYKLICRQCGQVLRSNTAAREHHQFHSGHSYICEHCGRIFDKYATRLNHVRIHHGSVSCDICHMKFTSEAGLVTHKTKAHKEMFKCACCLVLFHNGIALQRHQQLAGARCGAHIKPCTQCGESCPDSAALTQHIVHQHGHENKRLKHMRQINTSFARRRREEGDSGPLTYMCEMCAKDDFKSEAALRYHQRKHSDERPVECDVCKKSFKDKYQLRVSPRPQVGWSAGRNCSRVEPVECDVCKKSFKDKYQLRVSPRPQVGWSAGRNCSRVEPVECDVCKKSFKDKYQLRVSPRPQVGWSAGRNCSRVEPVECDVCKKSFKDKYQLRVSPRPQVGWSAGRNCSRVEPVECDLCKKSFKDKYQPRVSPRPQVGWSAGRNCSRVEPVECDVCKKSFKDKYQLRVSPRPQVGWSAGRNCSRVEPVECDVCKKSFKDKYQLRIHMTIHTDERRFQCPLCVKAFRQQQHLTTHIRSHTNEKPYSCEVCEKQFKHKRSMQDHVRTVHDCLPPRKRVRHNAPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -