Scos031674.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- ZFX
- Assembly
- GCA_949820665.1
- Location
- OX463314.1:17654685-17660079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.15 17 7.4 4.6 1 23 198 220 198 220 0.97 2 14 4.1 4.5e+02 2.9 0.2 6 23 231 249 231 249 0.94 3 14 0.2 22 7.0 0.1 2 23 258 280 257 280 0.91 4 14 0.00048 0.052 15.2 1.6 3 23 307 327 305 327 0.97 5 14 3.1e-06 0.00034 22.1 0.2 1 23 333 356 333 356 0.97 6 14 0.043 4.7 9.1 0.4 2 23 363 384 362 384 0.92 7 14 0.00057 0.062 15.0 1.9 1 23 390 412 390 412 0.98 8 14 0.25 28 6.7 3.0 1 23 570 592 570 592 0.95 9 14 0.00042 0.045 15.4 2.0 2 23 599 621 598 621 0.92 10 14 7.6e-06 0.00083 20.9 3.2 1 23 627 649 627 649 0.97 11 14 1.3e-06 0.00014 23.3 4.4 1 23 655 677 655 677 0.98 12 14 0.00013 0.014 17.1 1.7 1 23 683 705 683 705 0.98 13 14 4.8e-05 0.0052 18.4 6.8 1 23 711 733 711 733 0.97 14 14 5.6e-05 0.0061 18.2 2.3 1 23 739 762 739 762 0.97
Sequence Information
- Coding Sequence
- ATGGATAATGAGACTGAACAGATATTCATACTGAATTCTTCTGAGCTGCAGGCGTGCGCTCCGCTGCAGAAAGTGGCTGATACTCCCGCAACAGCGCAGGTTAACCTCGAGAATGTGGAAGACTTCTCAACAGTATGTCGGCTGTGTGCCACCATCACGGAGTTCGTCATCCCGATATTCTCTGGAGAGGGGATGCAGAACAGCCTCGCAGACAAGATACACAAACATCTACCTATCAAAGTGACAGAAACAGATGCCCTGCCCCGGGGCGTCTGCTACCAGTGCGCTCACACACTCCTCGCGTGGCACGAGCTGGTGAAGTGCTGTGAGCAGGCTGACCTTGCGCTAAGGACTAGGCTGGACCAGCTACAGAAATCTACTACTGAGGCACAGTGCCCTGAGGAACCCACTTCAGAAACCTTTGATGACCTCAACAATCATATAGAAACTGTGCATGCATCTGAAATTGAAAATCAAGAAGCTTTAGAACAATTTATTGAAGGAAACATTACTTATGAAGAACAATTGGTGATGGATGGCGAACATAGCTTTATGGATCATGAAGAAGAACCGTCAGAATCACTTCCCAACTTCTGTTGCCCATTCTGTGTCAGCGTCTTCTCAACCAGCACTCGCCTGCTTCACCATCTAAACCAACATTCAGTAAACGTAAAAGACAAACTGAAATGTTGCAATACAACGTACTTTGATAAGATGTCCTATGTAAAGCATTTGCAAGACGCCCACTCAAAGCCTGAAGTAGTTTCAACAACTTGCAAATCTTGTGGATACTTTGGAGAAACTACTGAAGACCTTCAAGTTCATATAGCTGATGCACACGGCGACAATGACAAACATAAAGATAAACACAGCAATGAGAAGGGAAGTAAGAGAAACCAGAAATATATTCCTGTTCATTGCCCAGTGTGCGACAAACTTTTCAGCAATAAATACCGCATGCAAACTCATTTGGAGACACACTATGAAAAGAAAAGATTCGTTTGCGGAACATGCGACAAAAGCTACAGTAATTTAGGCAATCTGACTGCGCATAGGAAGGTAGCTCATGACGGAGTGTTGAATATTCATTGTTCAGTATGTGGAGAGGCCTTCGCGTCACGTTCAGCGCGGGACACACACAAGCTACTCCATACGAACGAAAGACCATTCTCCTGCGATTTTTGCCTCAAATCGTACACCTCAAAACTGACTCTCACCCGCCACCTAGAAATGCATCTAGACATAAGAAAGTCTAAGCCCTGCCGAAATACCAATATTGATACAACCTTTGAAGACCAAATCAAGAATGAATATGAAATCGAAATAGAATTTGATGATGAGGGAGCTAATGATTCTGATGGAAACAACCAGGGCAATGACCAAAAAGTATCTGATGACGACGATGAACCATTATCGTCAGTAGCAACCACCAAAAAAACAGATCTTTACAATAACTTCTACAATGCACTGATAAACTTTAGAAATCACTTTGTTCATGAACATAAAGAAAGAAATTATCCAGATGTAACAGATTCCAGTGACTCTGAATTGGTAGATGAAGAATTCAAAACGAATGCTGAGACTGACCAAGACGATATCGACAACTACGACGATTTAACACACAGCAACATGAGGAAAGACAGAATGGACGAAGAAACAAGATTAGAACTCATTCAGGTGCAAACGAAAATCAACGGAAAAGTTTACTACAACTGCAGAATATGCGGAAAGAACTTGAGTTCATCGCACACTTACGTTTTCCACAAACGAATACATACAGGAGAGAGGCCGTGCGTCTGTCACGTTTGCGGGAAACAGTTCCGAGCTCCAAATGGACTTCAGAGACATCTGACGGAAACACACGAGAAAGTCAGGCGGCATTCCTGTCGGTTCTGTCCGAAGAACTTCGCCAACTCGCAGAATCTTAAACAACACATGAGAATCCATACAGGCGAGCGACCCTTCGTCTGCTCTCATTGCGGGAAACGATTTACCCAAAGCGGCTCCTTGCACGTGCATTTGAAGACACATAGCGAGCAGTTCCCGCATCAATGTGCCGAATGCGGAGCCAAATTTAGACTGAGATCTGGACTGACGAGACATAGACTGAAACACACCGGAGAGAGACCTCACACTTGTCTACATTGCGATAAAGGTTTTCGTCAAAAACACGAGTTAAACAGCCACATGCTGTCTCACAGTGACTCTAAACCATTCACGTGTACATTATGCGGAGCTGCGTTTAGACAAAGACGTGCGCTTACGCATCATACCAAGCGACTGCACGAGAGTGATCAGAACAGGGATGCGACGCAGGCCGTCGCGCGGGGATCCAACATGGTCGTCTATACGAACATTGGACAATTTTAG
- Protein Sequence
- MDNETEQIFILNSSELQACAPLQKVADTPATAQVNLENVEDFSTVCRLCATITEFVIPIFSGEGMQNSLADKIHKHLPIKVTETDALPRGVCYQCAHTLLAWHELVKCCEQADLALRTRLDQLQKSTTEAQCPEEPTSETFDDLNNHIETVHASEIENQEALEQFIEGNITYEEQLVMDGEHSFMDHEEEPSESLPNFCCPFCVSVFSTSTRLLHHLNQHSVNVKDKLKCCNTTYFDKMSYVKHLQDAHSKPEVVSTTCKSCGYFGETTEDLQVHIADAHGDNDKHKDKHSNEKGSKRNQKYIPVHCPVCDKLFSNKYRMQTHLETHYEKKRFVCGTCDKSYSNLGNLTAHRKVAHDGVLNIHCSVCGEAFASRSARDTHKLLHTNERPFSCDFCLKSYTSKLTLTRHLEMHLDIRKSKPCRNTNIDTTFEDQIKNEYEIEIEFDDEGANDSDGNNQGNDQKVSDDDDEPLSSVATTKKTDLYNNFYNALINFRNHFVHEHKERNYPDVTDSSDSELVDEEFKTNAETDQDDIDNYDDLTHSNMRKDRMDEETRLELIQVQTKINGKVYYNCRICGKNLSSSHTYVFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHEKVRRHSCRFCPKNFANSQNLKQHMRIHTGERPFVCSHCGKRFTQSGSLHVHLKTHSEQFPHQCAECGAKFRLRSGLTRHRLKHTGERPHTCLHCDKGFRQKHELNSHMLSHSDSKPFTCTLCGAAFRQRRALTHHTKRLHESDQNRDATQAVARGSNMVVYTNIGQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -