Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463300.1:8039597-8052852[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 18 7.2 3.6 1 23 154 177 154 177 0.96

2 12 0.19 21 7.1 1.2 1 19 184 202 184 206 0.92

3 12 0.00041 0.044 15.5 2.6 2 23 213 234 212 234 0.97

4 12 5.4e-06 0.00058 21.4 0.9 1 23 240 262 240 262 0.98

5 12 2.6e-05 0.0028 19.2 1.0 1 23 271 293 271 293 0.97

6 12 0.00013 0.014 17.0 1.8 2 23 300 321 299 321 0.96

7 12 0.00021 0.023 16.4 7.4 1 23 327 349 327 349 0.97

8 12 1.6e-08 1.8e-06 29.3 0.7 1 23 355 377 355 377 0.99

9 12 8.2e-06 0.00089 20.8 1.4 1 23 383 405 383 405 0.98

10 12 4.8e-06 0.00052 21.5 0.7 1 23 411 432 411 432 0.97

11 12 8.1 8.7e+02 2.0 3.0 1 23 438 460 438 460 0.91

12 12 5.1e-06 0.00056 21.5 5.6 1 23 466 488 466 488 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	18	7.2	3.6	1	23	154	177	154	177	0.96
2	12	0.19	21	7.1	1.2	1	19	184	202	184	206	0.92
3	12	0.00041	0.044	15.5	2.6	2	23	213	234	212	234	0.97
4	12	5.4e-06	0.00058	21.4	0.9	1	23	240	262	240	262	0.98
5	12	2.6e-05	0.0028	19.2	1.0	1	23	271	293	271	293	0.97
6	12	0.00013	0.014	17.0	1.8	2	23	300	321	299	321	0.96
7	12	0.00021	0.023	16.4	7.4	1	23	327	349	327	349	0.97
8	12	1.6e-08	1.8e-06	29.3	0.7	1	23	355	377	355	377	0.99
9	12	8.2e-06	0.00089	20.8	1.4	1	23	383	405	383	405	0.98
10	12	4.8e-06	0.00052	21.5	0.7	1	23	411	432	411	432	0.97
11	12	8.1	8.7e+02	2.0	3.0	1	23	438	460	438	460	0.91
12	12	5.1e-06	0.00056	21.5	5.6	1	23	466	488	466	488	0.98

Sequence Information

Coding Sequence: ATGGAGAGCGAAGTAACGCAAAGAGAGGACTGCTTCGAAATCGAAATCCctttcaatttatttcaatatttgagCACagaaaactgcaatatacacgGTTTGTGTCGAATATGTCTGTCCGAGACGAATCAAGAGCTTTTCCCGCTGATATCGGCCGCAGATAGCGGACTACAGGAGATGTTTACTGGGATCACAGCTATACaagTATATCCCAATGATGGACTACCATCACAAATCTGCAATTTATGCCGGACAAATGTCCTAACCTGTTTTGAGTTCAAGACCCAATGTTTGAAGTCTGATTGCGCTCTCAAGTCTTTACTCAAGGGAGAATTTGTTACCAAAGATGAATCAATCGCAGCACCTGTTCAAACAGAGCCAAAggAAAGACCAAGTACGCTACTAGCCCAATATAAGTCAATTCCTGACCACAAAACCAAAGAAAAGAAGCAAAAGTTACATACTTGTAGTTTTTGTCTCAAGAAGTTCCGCAGCTTGACAGTGATGAAATCCCACGTGAATCGCATACACGGCTCCACGCGGCACAAGTTCTCTTGCGCCAAATGCAAGGAATTCTTCGAAACGGAACACGATCTTGATCTTCATAAGCCGATACATGAACCCGGACCTTGCTGGACTTGCGTGCAGTGTCACAAGGGGTTTGAAGGCCGGTCAATGTTCCGCCGACACATAAAAAGACACATGGAGTGCAAGAGGTACTCTTGTGATTCCTGTGGGAAAACGTTCACGGAGTTGTACGCGTTAAAAAGGCACTCGCGCGTCCATACCGGCGAGAAGGTTGAAAAGCGATACGCCTGCCATCTCTGTGACAAAAGATACGCCAACGGCAGTCTTTTAAAGAAGCATATAGCGCGTCACGGTGACATACGGCCTTGTATTTGCGATGTATGCGGCAAAGCTTTCCCTACAACGAGACTACTGTTGTCTCATCATCGCATACATTTGGACGAGAAACCGCATTCATGCCGGTATTGTGAGAAACGGTTTCGCCACGAGTCGACCCTACGTACACACGAGCGCACGCACACAGGCGAGCGGCCGTACGTGTGTGCGACGTGCGGGAAGCGCTTCATACAGAACTCCAACCTCACGCTGCATATGCGCACACACACtgGTGATCGTCCATATGCGTGTGAGACCTGTGGGCGTTGTTTCTCGTCGGGCTCTACGCTCAAGAGCCATCTCGCCACTCACACCGGGGAGAAGCCCTATGAGTGCACCGAGTGTGGCAAAAGATTTGTGCGTAAGGACTTGCGCGCGCACATGCGGTTACACTCGGGCGAGAGGAACCACGCGTGCGGGGTGTGCAGTAGACGCTTCTTGACTGCCAACAGGCTGAGGGACCATTGCAGAGTACACACCGGTGAAAAACCATTTGAATGCGATCACTGCTCGATGAAGTTCTCATCGAAATCCCACCTTGTGAAGCACGTGAGAACGCATAATGTCAAGAAAAAACGCTTCATCAACGTACCAAAAGACCCACCAGTAAACGAGACAATTGAAGATAATAACAGAACAGATAGTATAGAAATAGATGTTGTTGGTGAGACTGGTAGCAAAGATGTGATTGTTGAAACTGAACATGACGACGGTGACGTCACTGGAGAGATTATAATAACTGATCAAGATTCCCAAGCAGATATACAAACGGGCGCCCTGTGTCTGGACACAGAACAAAACTACCCTGTGAACTTAGTCACAGTCGATGAGAACGGGATTCGCATCACGTCGATAGATAATAGCGTCAAGTTATATCAGGTGGACCAGAGCCTCGTGCAGATCCACAGCGCGCCGGGACAGCTCACCATAAGCAAATATACCAGCAAGATGACCGCCAATTTCTAG
Protein Sequence: MESEVTQREDCFEIEIPFNLFQYLSTENCNIHGLCRICLSETNQELFPLISAADSGLQEMFTGITAIQVYPNDGLPSQICNLCRTNVLTCFEFKTQCLKSDCALKSLLKGEFVTKDESIAAPVQTEPKERPSTLLAQYKSIPDHKTKEKKQKLHTCSFCLKKFRSLTVMKSHVNRIHGSTRHKFSCAKCKEFFETEHDLDLHKPIHEPGPCWTCVQCHKGFEGRSMFRRHIKRHMECKRYSCDSCGKTFTELYALKRHSRVHTGEKVEKRYACHLCDKRYANGSLLKKHIARHGDIRPCICDVCGKAFPTTRLLLSHHRIHLDEKPHSCRYCEKRFRHESTLRTHERTHTGERPYVCATCGKRFIQNSNLTLHMRTHTGDRPYACETCGRCFSSGSTLKSHLATHTGEKPYECTECGKRFVRKDLRAHMRLHSGERNHACGVCSRRFLTANRLRDHCRVHTGEKPFECDHCSMKFSSKSHLVKHVRTHNVKKKRFINVPKDPPVNETIEDNNRTDSIEIDVVGETGSKDVIVETEHDDGDVTGEIIITDQDSQADIQTGALCLDTEQNYPVNLVTVDENGIRITSIDNSVKLYQVDQSLVQIHSAPGQLTISKYTSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -