Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463301.1:15146600-15152206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6e-05 0.0018 19.9 0.1 1 23 474 496 474 496 0.98

2 8 7.2e-06 0.00078 21.0 2.8 1 23 502 524 502 524 0.98

3 8 8.9e-06 0.00096 20.7 0.6 2 23 533 554 533 554 0.98

4 8 2.8e-06 0.0003 22.3 0.4 1 23 560 582 560 582 0.99

5 8 1e-07 1.1e-05 26.8 2.6 1 23 588 610 588 610 0.98

6 8 2.5e-06 0.00027 22.5 2.2 1 23 616 638 616 638 0.97

7 8 0.00011 0.011 17.3 7.3 1 23 644 666 644 666 0.97

8 8 1.4e-05 0.0015 20.1 0.8 1 22 672 693 672 693 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6e-05	0.0018	19.9	0.1	1	23	474	496	474	496	0.98
2	8	7.2e-06	0.00078	21.0	2.8	1	23	502	524	502	524	0.98
3	8	8.9e-06	0.00096	20.7	0.6	2	23	533	554	533	554	0.98
4	8	2.8e-06	0.0003	22.3	0.4	1	23	560	582	560	582	0.99
5	8	1e-07	1.1e-05	26.8	2.6	1	23	588	610	588	610	0.98
6	8	2.5e-06	0.00027	22.5	2.2	1	23	616	638	616	638	0.97
7	8	0.00011	0.011	17.3	7.3	1	23	644	666	644	666	0.97
8	8	1.4e-05	0.0015	20.1	0.8	1	22	672	693	672	693	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTATCTTGCCGCGAGTGGAGCGACGTGCGTCTGCAGTGCGGCGGGCGTGCGTTCGCCGCACACCGCGTCGTGCTCGCCAGCGTCAGCGCTTTCCTCCGCCGAATACTCCTTTCATGCCCGACGGAAGAGACGCCGACGTTTATAGTTCTACCCGACTTCGACCTCGACGCCATGTCATCTgtgctttattatatttataatgggGAAGTAGTAATTCAAAAACAGAAATTAGAAATGTTTATGGAAATAGTGAATGCGATGCAAATATTTGTAGATGAAAAATATTTGCCAAGCTCTTGTAAAGGTGATGAGGATGTGTCaatgtgcacaaaatttaatctGAGAACTTTCGAGAAAAACGAAGTGTTTTGTATCGGCGAAGTTACTGATGGATCGTACGTAAATTTCAAGAAAGAATACAAATCTGACTGTTccttattctcaaaatcccaaAACGACTCAGAATCTAGAGATAAGCAAATCAGATGCGCGGATTGGACAAAACAAGCATTAGGAAATATGGAATCGTCATGTGGGGACCGACAAAGGAGTTTCCTACGTGATTTATTTATGGAGACATATCCTCGGAACGGTTTAGCTAACGGTCAGGCGGGAGGCGTGCGCGCAATACAGAGCGTGCAGTATCGCGGGCCATCGCAGCACCAGACGCATGCAAATAGCAAACATCTTCAAACTGATGACACGCACGAGATGCACAGTCCTTCAGATATTCTTCAAACACTTCATAACAATTCTACTTCAAGCCACGATTCTCATTACCCCAGCAATCGTTTGGGTTTGATTAGTACCACCGAACTTGCACAGATGAAAAAGCTAAATTCAGCGTTTACTTATTTCAATCCAAAACCAGTATTAGATGTTCCAAATAGtgaattaaataacaaattactaGAACATTTCTCTATGCAACAGATGCAAAGTGGAATACAGGAGATGTTACCAAGAGTTCCAACTTACGACATTAGAAGGATCGAAACATATGCTGCACTTATGAATCAAAGAAGTTTACATACGAGCTGCTTAATTGGAGGTAATAATTTTCAAAGAAAGGAAATAGATGATGACCATTCACAGATCAATGTGAAAAAAGATACCAAAACAGCTTCATCCAAAAATGTTTTTGCTATGTTCTCCAAAACTACTGTTCTGAACGAAGTGTTGGACAGTCCTTGGCGTCCTCGACAACCAACTAATTACAAACCATTTCGCAGAAAAGTACAGGATACTTCTAGAACTTCAGATAATGATGCTAagGAATGCGCAATAAATGATAGCAACAATAATATTCGAACTTCGCTATCTCCAGAAGTGACAGAAAGAATATCTACAAATGCAACTACGATGGAACCTTCTAATAATACTGCTGCATTAGCTATTGGTAGTGACTTTAAATGCACTATTTGTGAGCAGGTGTTCATAACAGCTGATGCCCTGGCCGCCCACTCACGTCGGCACTCCTTCCCAGCACGATACTCCTGCACCGAATGCTCTAAAAGCTTCTCCCAGCTGCGCAACTTCAAGTACCACATGTCGGTCCACCGAGGAACGCGGGAGTTTGCTGCAACCTGTACTGTCTGCGGGAAGTACTTCAACGACAGGGGCTACCTCAGCAGCCATATGAAGATACACCGAAACCGTAAAGAATACAAGTGCCCGCAGTGTCCAAAATCCTTCAACCAGCGCGTCGCGTACAACATGCATGTTCGAATTCACACGGGTATCAAACCACATGTTTGCAATGAATGCGGCAAAGCCTTCTCTCGGAAAATGCTGCTGAAGCAACATCAGCGAACCCATTCGGGAGAGAGACCCTACGCTTGTACCCATTGCGACAAGCGGTTTGCGGATCGGTCCAATATGACTCTACATCTGAGATTACACACTGGCGTAAAACCTTTCTCCTGTACGCTTTGTCCGAAGTCCTTCACAAAGAAACATCATCTCAAATCCCACCTCAACTTCCACACGGGAGCCAAGCCGTACTCCTGTCCTAAATGCAACCTCGCTTTTACGCAGTCGTCAAACATGCGCACTCACCTAAAGAAATGCACAGCGCCTGATCCAATGGAGAACGCAAATACACAAAGTAGTAGCTGA
Protein Sequence: MCEWLSCREWSDVRLQCGGRAFAAHRVVLASVSAFLRRILLSCPTEETPTFIVLPDFDLDAMSSVLYYIYNGEVVIQKQKLEMFMEIVNAMQIFVDEKYLPSSCKGDEDVSMCTKFNLRTFEKNEVFCIGEVTDGSYVNFKKEYKSDCSLFSKSQNDSESRDKQIRCADWTKQALGNMESSCGDRQRSFLRDLFMETYPRNGLANGQAGGVRAIQSVQYRGPSQHQTHANSKHLQTDDTHEMHSPSDILQTLHNNSTSSHDSHYPSNRLGLISTTELAQMKKLNSAFTYFNPKPVLDVPNSELNNKLLEHFSMQQMQSGIQEMLPRVPTYDIRRIETYAALMNQRSLHTSCLIGGNNFQRKEIDDDHSQINVKKDTKTASSKNVFAMFSKTTVLNEVLDSPWRPRQPTNYKPFRRKVQDTSRTSDNDAKECAINDSNNNIRTSLSPEVTERISTNATTMEPSNNTAALAIGSDFKCTICEQVFITADALAAHSRRHSFPARYSCTECSKSFSQLRNFKYHMSVHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCPQCPKSFNQRVAYNMHVRIHTGIKPHVCNECGKAFSRKMLLKQHQRTHSGERPYACTHCDKRFADRSNMTLHLRLHTGVKPFSCTLCPKSFTKKHHLKSHLNFHTGAKPYSCPKCNLAFTQSSNMRTHLKKCTAPDPMENANTQSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01337041;
90% Identity: iTF_01337041;
80% Identity: iTF_01337041;