Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463324.1:1898476-1902256[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.089 9.7 8.1 0.9 1 23 70 93 70 93 0.90

2 20 0.72 78 5.3 7.0 2 23 164 185 163 185 0.96

3 20 0.034 3.7 9.4 2.6 1 23 189 212 189 212 0.97

4 20 0.0073 0.79 11.5 0.8 1 23 291 314 291 314 0.93

5 20 0.038 4.2 9.3 0.1 2 23 341 363 340 363 0.96

6 20 0.0084 0.91 11.3 6.9 1 23 385 407 385 407 0.98

7 20 0.0032 0.35 12.6 0.1 1 23 411 433 411 433 0.95

8 20 0.11 12 7.8 0.4 1 19 438 456 438 459 0.89

9 20 0.32 34 6.4 1.0 2 23 470 492 470 492 0.93

10 20 9.7e-06 0.0011 20.6 6.3 1 23 499 521 499 522 0.95

11 20 0.00075 0.082 14.6 2.0 1 23 528 550 528 551 0.95

12 20 3.4e-05 0.0037 18.8 0.1 1 21 560 580 560 581 0.96

13 20 0.00049 0.053 15.2 0.5 1 23 646 669 646 669 0.96

14 20 0.00044 0.048 15.4 0.3 1 23 766 788 766 788 0.98

15 20 0.0036 0.39 12.5 1.3 1 23 793 816 793 816 0.96

16 20 0.034 3.6 9.4 0.5 2 23 824 846 823 846 0.95

17 20 0.00047 0.051 15.3 3.5 1 23 852 875 852 875 0.98

18 20 0.025 2.7 9.9 2.8 1 23 881 903 881 903 0.95

19 20 0.00033 0.035 15.8 3.6 1 23 909 931 909 931 0.99

20 20 0.00041 0.045 15.5 5.0 1 23 937 960 937 960 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.089	9.7	8.1	0.9	1	23	70	93	70	93	0.90
2	20	0.72	78	5.3	7.0	2	23	164	185	163	185	0.96
3	20	0.034	3.7	9.4	2.6	1	23	189	212	189	212	0.97
4	20	0.0073	0.79	11.5	0.8	1	23	291	314	291	314	0.93
5	20	0.038	4.2	9.3	0.1	2	23	341	363	340	363	0.96
6	20	0.0084	0.91	11.3	6.9	1	23	385	407	385	407	0.98
7	20	0.0032	0.35	12.6	0.1	1	23	411	433	411	433	0.95
8	20	0.11	12	7.8	0.4	1	19	438	456	438	459	0.89
9	20	0.32	34	6.4	1.0	2	23	470	492	470	492	0.93
10	20	9.7e-06	0.0011	20.6	6.3	1	23	499	521	499	522	0.95
11	20	0.00075	0.082	14.6	2.0	1	23	528	550	528	551	0.95
12	20	3.4e-05	0.0037	18.8	0.1	1	21	560	580	560	581	0.96
13	20	0.00049	0.053	15.2	0.5	1	23	646	669	646	669	0.96
14	20	0.00044	0.048	15.4	0.3	1	23	766	788	766	788	0.98
15	20	0.0036	0.39	12.5	1.3	1	23	793	816	793	816	0.96
16	20	0.034	3.6	9.4	0.5	2	23	824	846	823	846	0.95
17	20	0.00047	0.051	15.3	3.5	1	23	852	875	852	875	0.98
18	20	0.025	2.7	9.9	2.8	1	23	881	903	881	903	0.95
19	20	0.00033	0.035	15.8	3.6	1	23	909	931	909	931	0.99
20	20	0.00041	0.045	15.5	5.0	1	23	937	960	937	960	0.98

Sequence Information

Coding Sequence: ATGACGGGTCCATCAGGGAAACCAGGACCCAGGACTCTACCGATTGCGTACGTTCCCATAAGTTTCCAAGGAATGGCAACACCTAAATCactgaaaacagaaaaacatgaaatttcaaaagaagtTATGTATAAATGCCGCGCTGCTGTCAGAGAAATATTGTACCACTCGAACGCAACAGCACTCAATAATCATACCGCAAAAGGATATAGCTGTTACTTTTGCCCAAACCATTTCCAAAACCCAGCAGACCTGAAGATTCATAATATGGATGAACATTACAAGGAAATTAATAACTTCAAGAGAAAAGATTCATCCGCGAAATTTTTCGTAAAACTGGACATAACCGGACTACATTGCAAAATATGCATGCAAGATCTCGACAGTGTTGAAACGTTAATAGAACATCTGAATGCTGCACatgacaaaaatgttttttctgaTATAAAGCTATACATATTTCCGTTCAAATTTGACAGTAATGACTTGCGTTGTTGCCGCTGCTTCAACATCTTCACCTCCTTCAAGGAACTCCAAACGCACATGCACACACATTATAAGAACTTCTCATGTGACCGTTGTTCTGAAGGATTTGTTAACTACTGCTCCCTTGAGCAACATAAATCTACATCCCATTCAAATATCACACTGACTAAGAATCTCAAAGTTAAGCCTCAAACAGCGTCGGAGACAAAAGCTGAAAAGATCGAACCGGTTAAATCCCAAGAGAACGTGCCGAAAAAGCGAACGAAAACTAcagaaaaacaatataatatattcagGATGCCTACGAATTATCTGAACTCATTTCTCAAGAAGATTATGACTAACTCGAATGCAACTCCGATACGGCATCACACTGGGAGCAGCTTTGTCTGCAGCTTCTGTCCTGAGCAGTTCCAGAAATCAGGTGATCTCAAGCAGCACACAACACAAGATCACATCATAACGGATTTCGCCAGATTCATGTATAAATGTTTAACCGCGAAATACTACGTCAAAATGGACATCACCGGTCTGCAATGCAGAATATGCAACCAAGATACACCTACCATTGACCAGCTTATTGAAcatctaaacaaaaatcatGATAGCAAAGTGATACCTACGATCAGTAAAGTGATATTTCCCTTCAAGTTTGAAACGGATGAGTTCCGATGCTGCGATTGTTCAAAGTCGtatgataattttaaaactCTTCAAGAACACATGCATAGTCATTACAGCAACTTTCTTTGCGAAATCTGTTCAGCTGGGTATATCACCAGGTCTGCCCTTAGTGTGCATCAGAGGGGCCACGTAACAGGCTCCTTTAAATGTCCTCGCTGTGCTAAAGTCTTTAATACAGAAGCTAAAAGGAAATATCACGTTACTCTTTGCAAAAAATCCAAATTTGGACACACAAACGTGTGTAGACTCTGCAATGCGCGCTTCTCAGActtctataaaaaatacaggCACATGATCCAAGACCACGGCATGACATCGCTGAAACATACCTGTAAGGGTTGCGGCAAAGAGTTCAAAACCAAAACTAATCTGAACGCTCACTTCAAACGCCACCATCTTATGCTAAAGCCGCATGAGTGCGACGAATGTGAGATGGCTTTCTTCTCCCCCGCTGAACTAAAGAAACATTCCAACAGGCACCACACCACTGGGCCTACAGAAAAGAAATTCGTTTGTGTTGTCTGCTCCAAGGGGTTTGTACGGAACAGCACACTACAAGAGCATATGCGTAATCGGCGAGTATCAAATGGAGAACTATACATCAAAACCGAATTTGAAGATCAAGAGATCGTAGAGACTATCGACGATAGTACAGACAAGCCGAAACGAGCTAAAGGAGAGGTGCTAGAGAGACACCGAACAACAGTCAGAGAAATACTGCTCTGCTCAAACGCCACCCCCATTCGAAGCAAGACTAATGTAGGCTACTCTTGCAGTTTCTGTCCCAAACAGTATCCTGACCCAAAAGACCTGAAAGATCACACGATTAAAACCCACGGCGCCGAAGAAAAAGCAAACTTTATGAAAGGAAAAGATTTATCGAAGTTTTACGTAAAGTTGGACATAACGAAGTTAAAATGCACTCTTTGCAATCTTCAAATAGCAAATGTTGAAGATATGATGGATCATCTCAGTGAAACACATAACAAAATTGTGTACACTGAAGTTAAAAGCCAGATATTACCTTTTACATTTGACGAAGATGACCTTAAGTGCTTCGTTTGTAGAAATAGGGTACACAACTTTAGAGTCTTAGTTGAACATATGAATGTGCACTATAGAAACTATATTTGCAAGGATTGTGACGCCGGCTTCGTTAGTCAGAGCATCCTGTTCCAGCATCTAAAGACGCATAAAATAGGGACTTTTAAATGTGATTACTGCACGAAGATTTTTACGACGCTTCTCAAGAAAAGAGCGCACGAGAGAGTCGTCCACACACATTCGAACGTTCTCAACAAATGCGGGTTCTGTTCGGAGACCTTCAAAGATTACTGGCAACGGGAGAAACATCTCGCCAGCGCACATGGAATGGTTTCCACATACAAATGTCAAGCTTGCGACAAAACCTTTCAGCACCAGAAAGGTTTGCGTATACACACGAAGCGCGATCATTTGATGGAAAGGCCTCACGCATGTACACAATGTGATATGAGATTCTTTACAGGGAAGAAACTGAAAGAACATATGGTGAAGCATACAGGTCTTAGAGAGTTCCAATGTGAGATATGTATGAAATGCTACGGGAGGAAGAAAACCCTCAGTCAGCATATGAGGGTTCACGACGATTTCTGCAAGTTTAAGTGTAAACATTGTGGGCAAGGGTTCGTTCATAGAACTAGTTATGTAGGACACATGAGGTCGAAACATGGAGAGCAAGTGTAG
Protein Sequence: MTGPSGKPGPRTLPIAYVPISFQGMATPKSLKTEKHEISKEVMYKCRAAVREILYHSNATALNNHTAKGYSCYFCPNHFQNPADLKIHNMDEHYKEINNFKRKDSSAKFFVKLDITGLHCKICMQDLDSVETLIEHLNAAHDKNVFSDIKLYIFPFKFDSNDLRCCRCFNIFTSFKELQTHMHTHYKNFSCDRCSEGFVNYCSLEQHKSTSHSNITLTKNLKVKPQTASETKAEKIEPVKSQENVPKKRTKTTEKQYNIFRMPTNYLNSFLKKIMTNSNATPIRHHTGSSFVCSFCPEQFQKSGDLKQHTTQDHIITDFARFMYKCLTAKYYVKMDITGLQCRICNQDTPTIDQLIEHLNKNHDSKVIPTISKVIFPFKFETDEFRCCDCSKSYDNFKTLQEHMHSHYSNFLCEICSAGYITRSALSVHQRGHVTGSFKCPRCAKVFNTEAKRKYHVTLCKKSKFGHTNVCRLCNARFSDFYKKYRHMIQDHGMTSLKHTCKGCGKEFKTKTNLNAHFKRHHLMLKPHECDECEMAFFSPAELKKHSNRHHTTGPTEKKFVCVVCSKGFVRNSTLQEHMRNRRVSNGELYIKTEFEDQEIVETIDDSTDKPKRAKGEVLERHRTTVREILLCSNATPIRSKTNVGYSCSFCPKQYPDPKDLKDHTIKTHGAEEKANFMKGKDLSKFYVKLDITKLKCTLCNLQIANVEDMMDHLSETHNKIVYTEVKSQILPFTFDEDDLKCFVCRNRVHNFRVLVEHMNVHYRNYICKDCDAGFVSQSILFQHLKTHKIGTFKCDYCTKIFTTLLKKRAHERVVHTHSNVLNKCGFCSETFKDYWQREKHLASAHGMVSTYKCQACDKTFQHQKGLRIHTKRDHLMERPHACTQCDMRFFTGKKLKEHMVKHTGLREFQCEICMKCYGRKKTLSQHMRVHDDFCKFKCKHCGQGFVHRTSYVGHMRSKHGEQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -