Scos038842.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463324.1:1891241-1897108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.34 37 6.3 1.9 1 20 75 94 75 98 0.90 2 18 0.75 81 5.2 0.0 2 23 124 146 123 146 0.94 3 18 0.0015 0.17 13.7 4.3 2 23 169 190 168 190 0.97 4 18 0.04 4.4 9.2 2.1 1 23 194 216 194 216 0.93 5 18 0.0065 0.71 11.7 2.1 1 23 221 244 221 244 0.93 6 18 0.73 80 5.2 0.5 2 23 252 274 252 274 0.94 7 18 0.00012 0.013 17.1 3.0 1 23 281 304 281 304 0.97 8 18 1.9 2e+02 3.9 0.8 1 16 310 325 310 326 0.84 9 18 0.012 1.3 10.9 1.4 1 23 411 434 411 434 0.92 10 18 0.16 17 7.3 0.0 2 23 461 483 460 483 0.96 11 18 0.22 24 6.8 5.1 1 23 505 527 505 527 0.98 12 18 3e-05 0.0032 19.1 0.1 1 23 531 553 531 553 0.98 13 18 0.0084 0.91 11.3 1.0 2 23 559 581 558 581 0.89 14 18 0.00091 0.099 14.4 0.9 2 23 589 611 588 611 0.96 15 18 0.00025 0.027 16.1 0.8 1 23 618 641 618 641 0.95 16 18 5.4e-08 5.9e-06 27.7 1.4 1 23 647 669 647 669 0.99 17 18 2.5e-07 2.7e-05 25.6 1.7 1 23 675 697 675 697 0.99 18 18 0.00032 0.035 15.8 2.3 1 23 703 726 703 726 0.98
Sequence Information
- Coding Sequence
- ATGAAAAAAGACAGATATTCATTAGATAGTAAGCCACCGACACGTTCTGGACTTGGACAGCTATCTGCAGTTAAGTGTGAAACgtccaaaataaaaaaggaacccAAGGACCAAACAGAACTAGACAAAGCCAGAGAAGAACTCGTCAAGTGGCAATTAAGTGTGTTTAATATATTGACTTGCTCGAATGCTACTGTCATCAGTCATTACACAGGAGCCGGGTACAAATGCTGCTTCTGCCCACAGCAGTTCCTCAACCCAGCTGATCTTAAACAGCACAACATCGACCGCCACCTGAAAGACAGCAAAAACTTCAAAAAGCGCCAAACCCCATCGAGATTCTTTGCTAACATGGACATAACCGGCTTACAGTGCAGCATATGTGAAGTAGATATATCTTCTGTTGAACAATTAGTAGATCATCTAAATAATCAACACAATAAGGACGTGTCACCGGATATAAAGAAACTGATATTTCCTTTCAAGTttgtcggcgatgagcttcgtTGCTGTGACTGTCCGCAGATATTTAACACTTTTAAAGCGCTTCAGACTCACATGCACACACATTACAGCAACCACGTTTGTAGCGTGTGCTCAGTCGGATTCGTGACTAGAAGCTGTCTAGATAGGCATAAAGTACTACACAGCGAGGAATATTTTAAATGTGACTACTGTGACAAGAAATACAACACTTTGAGGATGAAGAAAAATCACGAAGAAAGCGTGCATGAGAAGAAAAACTTTAAGAACGTTTGTAGGCTCTGCAATGAACGCTTTGCACTCTACAGGCAGAAAGTAAGACATTTACTTCGCGTACATGGAGTAGGTGTGGCTGAGTATAAATGCAACTCATGCGATAAAGTCTTCTCAACTGACAGAGGTTTAATTCACCACACGAGGAACTTTCACCTGATAATGCGACCGCACAAGTGCGAATTTTGTGATATGAACTTTTACTCCGGCACGCAGCTCAAAGGTAAGCCACAGACGCCAAAGAAACCAGAAGTAAAGCTGATCAGACGTAATCGTATTACTATAAAATTGGATTCAAAAGAGAATCCTACGAAATCAAAAACATCTGAGAATCCTTCGGAATTAAAAACACCAGAGAAAGCAAGCCCATCGATCAAATGGGTTGAATCGTTATTGGACAAATACAGAGTGGCCGCAAGATCCCTCTTGGCTTTCTCAAACGCCACACCCATCGGCTACCACACTGGTCAACGGTTTAGATGCGGCTTCTGCAAAGAGGAATTCCAGAAAGCCTCCAAGCTCAAGCAACACACGATAGACACACATGGAAAAGACATTGACTCCTTCAAGAAAAATGTTGACAACTCATCGAAGTTTTTCGTCAAACTGGACATCACAAATCTGTCCTGCAATATTTGCGAAGAAAACATCCAGACAGTAGAACAACTTATAGAGCATCTGAACACGGAACACgacaaaaaaatcatagaagAATTAAAGACGTTGATATTTCCGTTCAAGTTTGAAACAGACGAATTCAAATGTTGCGAGTGTTGGAGATTGTTTGACACGTTCAAGGTACTACAAGAACACATGCATTCGCATTATAGCAACTACGTCTGTGGTTATTGCGGCGCTGGATTCATCAATAAGAGCTCCCTAGGTATGCACATGTTGTCACATGCTAAAGGTTCCGTTAAGTGTCGTTTTTGCGACAAAGTCTTCAAGAATACATCCATGCAACGGAACCACGAAGCGTATGTCCACAACACTGCTGCTCCCAGAAGTGTGTGCAGGATTTGCAACGAACGCTTCAAAGATTACGATTCCAAAGAGAAACATTTGAAAACAGTGCACGGAGTCGCTGCCACAGAGTATAAATGCCAAATATGTGACAAAGTCTACATGTCGCGGCAATCTCTATGGTCCCACAACAGAGATCAACATAAATTGAGCCGACCGTACCAATGCAAGGAATGTAACAAGGAGTTTACTACAAAAACGGCTCTCACCAGACATATGCTGGTACATACCGGGGCAAAGGAGTTCCAATGTGAAATTTGCCAGAAGAAATACGGGCGTAAGTCCAACCTAAATCAACACATGAAGATACATTTGAACGATAGAAGATTCAAATGCGAGTTCTGTGGTCTGGGATTTGTTCAGAATTGCAGTTTGAAGGGCCATCTGCGATCTAAACATGGCGTAGAATATCCGTAG
- Protein Sequence
- MKKDRYSLDSKPPTRSGLGQLSAVKCETSKIKKEPKDQTELDKAREELVKWQLSVFNILTCSNATVISHYTGAGYKCCFCPQQFLNPADLKQHNIDRHLKDSKNFKKRQTPSRFFANMDITGLQCSICEVDISSVEQLVDHLNNQHNKDVSPDIKKLIFPFKFVGDELRCCDCPQIFNTFKALQTHMHTHYSNHVCSVCSVGFVTRSCLDRHKVLHSEEYFKCDYCDKKYNTLRMKKNHEESVHEKKNFKNVCRLCNERFALYRQKVRHLLRVHGVGVAEYKCNSCDKVFSTDRGLIHHTRNFHLIMRPHKCEFCDMNFYSGTQLKGKPQTPKKPEVKLIRRNRITIKLDSKENPTKSKTSENPSELKTPEKASPSIKWVESLLDKYRVAARSLLAFSNATPIGYHTGQRFRCGFCKEEFQKASKLKQHTIDTHGKDIDSFKKNVDNSSKFFVKLDITNLSCNICEENIQTVEQLIEHLNTEHDKKIIEELKTLIFPFKFETDEFKCCECWRLFDTFKVLQEHMHSHYSNYVCGYCGAGFINKSSLGMHMLSHAKGSVKCRFCDKVFKNTSMQRNHEAYVHNTAAPRSVCRICNERFKDYDSKEKHLKTVHGVAATEYKCQICDKVYMSRQSLWSHNRDQHKLSRPYQCKECNKEFTTKTALTRHMLVHTGAKEFQCEICQKKYGRKSNLNQHMKIHLNDRRFKCEFCGLGFVQNCSLKGHLRSKHGVEYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -