Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463322.1:8457254-8494493[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.18 20 7.1 0.0 6 20 3 17 2 19 0.93

2 16 0.00086 0.093 14.5 0.2 2 23 29 51 28 51 0.95

3 16 0.0089 0.97 11.3 0.1 1 23 58 81 58 81 0.92

4 16 0.013 1.4 10.8 0.3 1 23 110 132 110 132 0.96

5 16 3.7e-08 4e-06 28.2 0.2 1 23 138 160 138 160 0.99

6 16 0.022 2.4 10.0 1.7 1 23 166 189 166 189 0.93

7 16 0.00022 0.024 16.3 0.8 1 23 195 218 195 218 0.95

8 16 0.0022 0.24 13.1 0.3 1 23 588 610 588 610 0.97

9 16 0.03 3.2 9.6 3.4 1 23 617 639 617 639 0.97

10 16 0.0016 0.17 13.6 0.0 3 23 673 694 672 694 0.97

11 16 0.45 49 5.9 0.2 2 21 701 720 700 721 0.93

12 16 0.0015 0.17 13.7 0.1 3 23 733 754 732 754 0.97

13 16 0.046 5 9.0 0.5 2 23 759 780 758 780 0.95

14 16 9e-07 9.8e-05 23.8 1.1 1 23 871 893 871 893 0.98

15 16 0.0001 0.011 17.4 5.2 1 23 899 921 899 921 0.98

16 16 8.1e-05 0.0088 17.7 3.5 1 23 927 950 927 950 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.18	20	7.1	0.0	6	20	3	17	2	19	0.93
2	16	0.00086	0.093	14.5	0.2	2	23	29	51	28	51	0.95
3	16	0.0089	0.97	11.3	0.1	1	23	58	81	58	81	0.92
4	16	0.013	1.4	10.8	0.3	1	23	110	132	110	132	0.96
5	16	3.7e-08	4e-06	28.2	0.2	1	23	138	160	138	160	0.99
6	16	0.022	2.4	10.0	1.7	1	23	166	189	166	189	0.93
7	16	0.00022	0.024	16.3	0.8	1	23	195	218	195	218	0.95
8	16	0.0022	0.24	13.1	0.3	1	23	588	610	588	610	0.97
9	16	0.03	3.2	9.6	3.4	1	23	617	639	617	639	0.97
10	16	0.0016	0.17	13.6	0.0	3	23	673	694	672	694	0.97
11	16	0.45	49	5.9	0.2	2	21	701	720	700	721	0.93
12	16	0.0015	0.17	13.7	0.1	3	23	733	754	732	754	0.97
13	16	0.046	5	9.0	0.5	2	23	759	780	758	780	0.95
14	16	9e-07	9.8e-05	23.8	1.1	1	23	871	893	871	893	0.98
15	16	0.0001	0.011	17.4	5.2	1	23	899	921	899	921	0.98
16	16	8.1e-05	0.0088	17.7	3.5	1	23	927	950	927	950	0.98

Sequence Information

Coding Sequence: ATGTCGTGTGGGACAGTCTTCCAAACGTCGGAGGCGTTAGAACGGCATAAGAATGACGTTAACGGATGTAATAGTATTACCATTTCGTGTTGGATCTGTGGGGCGAATTTCCCGTTCAAGTCGAGTCTTCATCAACATATAGAATCGGAACATGGAGGCAAGGGCGGAGTCTTCACTTGCGAACTGTGTGGCGCTGTATTCTCAACTGACCGAAGTCTGGGCATTCACTACGCGTACAACCACTCTAAAAGAGTCAAACATCACTCTAAGAAGGGACTGAAGCTTACGAACAGTGCTAAGACGGGCAAAGACGGGGCGCAGAGCGTTTACTTGTGCGAGATATGTGCTAAGAGCTTTCCGTGTCCGGCGAAACTCAAAGTTCATCTTCAAATCCACACCGGAGAGAAACCATACCGATGTCCGATGTGTCCTAAATCATTCAGGACTAAGAGCGCACTTGAAATCCACATCAACGTACACACAGGCGACCGTCCGTACAAATGTCGGCAGTGCCCAGAAACTTTCAAGTCGTACGCGCAGCGATACAAACATAATCTTATGGTACATACCCGCGAGCGTCGCCACAAATGTTCGATGTGTGACAAGACGTACGTCATAGCGTACGATCTGAAAGCGCACGTTCGTTTCGCGCACCTGCATCAGCCTCGCCCGCCGCGCAACCGGCGCCGTAACCATTGCGCGGATGATATTGGGTTCCCAACAGACGAAGATCAGAAAGAGGAATGGATCCGGGCCATCCGTCGTGAACCTACCTGGGTTCCTGGGACCCATTGCAGGGTATGCTCAGTCCACTTTGAGAACTCAGACTTCAAAATCTCTGAGACGGGCCGCCGCATCTTGCACAAAGACGCGATTCCCACCAAAAACCTGTACAGAGAGGAACGAGAGGATACTGGCAGCTACAAGAGAAAAGTTCTGAAAAAAACTCGCGCAAGGTTGAAATTATCCGCTACCGCGTGtgactctgacgtggtttgtcgAGCTTGCCTCGCCGTTCACACAGACATGTTTGAACTGACTGAACAACTTATTGAAACTTTTGCACAACTCACTGATGTTTCGATAACGCCTGACACTCTACGCACGATAGACAGAGACAAACACAATCTCGCACTCCCTTACTCCATCAAGAAACTGCCTCACGTTGACATCacagaaataaacattaaacaagAGAAGATAGACTTCACTTTAGAAGAAGACAGCAATATCGACATCGCAACTGTCATACAAGACGTGTCAAATGTCAACGACTTGACAGCTGTCACAAACGACGCTCTAGACGACGCCGATGACATGTCAAACGATTTTGACATTTTCGATGACAAAAACGACGCTTTGGACTCGGATTTGACAGAACAAAAACTGTTTGACAGTGATGTCAAAATAGAACATAACCAATTTATATTAGAAACAGAAGAAGGAAAATCTAAAGTGTATGGTAGTATAGTGCCTAAACATGAAATTTTCGTTGAGGACGCCAAGAATTCATTGAAGAGTGAGAGAAAGAGGAAGTCTGAGTTGAAAAGAAAGAGTAAGAAGATTAAGAAAGAGAAAGAACTGAAACTGACCAAGAAAGATCCAAAAGAGGACATTCGGAACACGAAACCTCGGAAGACCGACGAGGATTATGAGAACTTTGCTAAAGACCACGATGTGGATATAGTATTCCTTACCAGGGAAGAGCAAATCGCTGAGGTGGTAGCGCGCAAAGAGAGTGACAACTATAAGAACTCTCGTTTCAAATGTGACGAGTGCTTCAAAGGATTCACCGGAGAAGCCGCATTCCAAAACCATAAGGCTATACACGATCCGAGCGTAGGCAGCTACGTATGCGAGGCGTGCAAGTTTAGGTTTCCGAAACGATACAAGCTGTTGCATCACATGACGCAACACAAGATGAATTTCACATGTAAACTGTGCGGGCATGTCAGCAAACTTGCTAAGCGCACATCTCAATTCAACCACATGCGCAACAGACACGGCTCGGCCGCTTGTGATATCTGCCAGGAGATATTCTCTGGGGAAAGGGGACTGACGGCGCATATGCAGAAGGCACATAAAGAGGCCGTGAAATCCCGCTGCGAATCGTGCGGCGTCCAGTTCCACACAGAGCTAGCTCTGTCGCGGCATCTGGAAACTCTGACGGGTCGGTGCACCTCCGATATCAGAGCTTGTGCCGAGTGCGGCGACAACTTCAGCAGCGAAGACGAGTTGAATGAACACATGAAGATGAATCATTGGAGGGAGATTAAATGTGAAAAGTGCAACGCGAACTTCGAGAACGAGAAGCTGTACCGAATGCACCGCGTCATACACAAAGAGGTGCGCAACCGGCGGCCGCGCTCCGAACCCGCCACGCTCGGCAGGAAACCCGCCAAGCTTGGCAAGAAGGGCAGCGCGCCGCCCGTGCAGAAGAGAATGTGCGAGATGTGCGGCCTCACGTGGCGGGTCGCCACGCTCGGCAGGAAACCCGCCGAGCTTGGCAAGAAGGGCAGCGCGCCGCCCGTGCAGAAGAGAATGTGCGAGATGTGGCGGAGCGCGGCGGCCCTGCGTTATCATCAGCGCGTCCATACTGGCGAGAAACCGCATCGCTGCCCGCTTTGTCCTAAGAGCTTCCGGATACAGGATTCATTGCAGATACATATGAACACGCACACAGGCGCGCGGCCGTTCAAATGTCCGCATTGTCCCAAAGCGTTCAAGTCTCGCACACAGAACCACAAACATCAGCTGGTACACACAAAAGTCCGCCGCTACCGTTGCGACCTCTGTGACAAAACGTTCCAAACCTCAACTTGCGTCAAAACGCACATACGCACTGTTCACATGAAAATACCGCCCCCTCCCCGCGTGCGTAGGAGGCACACAGACATACAACCACCCATACACACACACAGCCCGCAGCATTTACCATACATGCCTGTTAAGATGGACCATTTAGGCATGGATAGgcagtaa
Protein Sequence: MSCGTVFQTSEALERHKNDVNGCNSITISCWICGANFPFKSSLHQHIESEHGGKGGVFTCELCGAVFSTDRSLGIHYAYNHSKRVKHHSKKGLKLTNSAKTGKDGAQSVYLCEICAKSFPCPAKLKVHLQIHTGEKPYRCPMCPKSFRTKSALEIHINVHTGDRPYKCRQCPETFKSYAQRYKHNLMVHTRERRHKCSMCDKTYVIAYDLKAHVRFAHLHQPRPPRNRRRNHCADDIGFPTDEDQKEEWIRAIRREPTWVPGTHCRVCSVHFENSDFKISETGRRILHKDAIPTKNLYREEREDTGSYKRKVLKKTRARLKLSATACDSDVVCRACLAVHTDMFELTEQLIETFAQLTDVSITPDTLRTIDRDKHNLALPYSIKKLPHVDITEINIKQEKIDFTLEEDSNIDIATVIQDVSNVNDLTAVTNDALDDADDMSNDFDIFDDKNDALDSDLTEQKLFDSDVKIEHNQFILETEEGKSKVYGSIVPKHEIFVEDAKNSLKSERKRKSELKRKSKKIKKEKELKLTKKDPKEDIRNTKPRKTDEDYENFAKDHDVDIVFLTREEQIAEVVARKESDNYKNSRFKCDECFKGFTGEAAFQNHKAIHDPSVGSYVCEACKFRFPKRYKLLHHMTQHKMNFTCKLCGHVSKLAKRTSQFNHMRNRHGSAACDICQEIFSGERGLTAHMQKAHKEAVKSRCESCGVQFHTELALSRHLETLTGRCTSDIRACAECGDNFSSEDELNEHMKMNHWREIKCEKCNANFENEKLYRMHRVIHKEVRNRRPRSEPATLGRKPAKLGKKGSAPPVQKRMCEMCGLTWRVATLGRKPAELGKKGSAPPVQKRMCEMWRSAAALRYHQRVHTGEKPHRCPLCPKSFRIQDSLQIHMNTHTGARPFKCPHCPKAFKSRTQNHKHQLVHTKVRRYRCDLCDKTFQTSTCVKTHIRTVHMKIPPPPRVRRRHTDIQPPIHTHSPQHLPYMPVKMDHLGMDRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01336949;
90% Identity: iTF_01336949;
80% Identity: iTF_01336949;