Basic Information

Insect: Scrobipalpa costella
Gene Symbol: ham
Assembly: GCA_949820665.1
Location: OX463313.1:11753550-11784396[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.045 4.9 9.0 0.0 2 23 157 179 157 179 0.94

2 9 0.0002 0.022 16.4 0.3 1 23 186 209 186 209 0.94

3 9 2.1e-08 2.3e-06 29.0 0.1 1 23 215 238 215 238 0.96

4 9 1.8e-06 0.00019 22.9 1.7 1 23 244 266 244 266 0.95

5 9 6.4e-05 0.0069 18.0 6.1 1 23 272 294 272 294 0.99

6 9 8.5e-05 0.0092 17.6 0.6 2 21 302 321 301 322 0.94

7 9 1.5e-08 1.7e-06 29.4 0.7 1 23 720 742 720 742 0.98

8 9 5.5e-07 6e-05 24.5 1.7 1 23 748 771 748 771 0.97

9 9 6e-06 0.00065 21.2 3.3 1 23 777 799 777 799 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.045	4.9	9.0	0.0	2	23	157	179	157	179	0.94
2	9	0.0002	0.022	16.4	0.3	1	23	186	209	186	209	0.94
3	9	2.1e-08	2.3e-06	29.0	0.1	1	23	215	238	215	238	0.96
4	9	1.8e-06	0.00019	22.9	1.7	1	23	244	266	244	266	0.95
5	9	6.4e-05	0.0069	18.0	6.1	1	23	272	294	272	294	0.99
6	9	8.5e-05	0.0092	17.6	0.6	2	21	302	321	301	322	0.94
7	9	1.5e-08	1.7e-06	29.4	0.7	1	23	720	742	720	742	0.98
8	9	5.5e-07	6e-05	24.5	1.7	1	23	748	771	748	771	0.97
9	9	6e-06	0.00065	21.2	3.3	1	23	777	799	777	799	0.98

Sequence Information

Coding Sequence: ATGATGTTCTATTTGACAAATTCCCGTAATATTTCTGTTAACCCCCTCGCTGCCGCCGGGTCACAAGTGTCCGACATTGCATCCTTGACCGCGTCATCGATGACGGATGGCCAACATGTGTCGGCGGCACCCGCCAACTCATCGCACTATAGTTTTGGAGCTAGGGTCCTCGGGAAGAACGGCATCCGAGGCTGGCTGGACGGCACCACCGAGAAGAGCAACTGGCTGAAGCTGGTGCGCTCCACCAACTACCCCCATGACGTCAACGTGCAGCATCTGCTATTAGCTGGACAAGTGTGGTATAAGGTGATCCGGGACATCTCCTCAGGCCAGGAGTTGCTGCTGGGTCCAAGAACGCCGCTGCCTCTTCAGGATGTGTTCACGAATGCCCCTGAGCGTCAGATCTCGACTGCCAATCAAGCAGGTCAGCAGGGTGGAGAAGAAGAGGAAAGAGAGGACGCAGAACCACGGTGCTCCTTCTGTGACGCGCCTTTTCCTAATATTGAAGCtcTCGACCGCCATCAAATCCAGGCGCACGCGCAGCCAGCTGCCGCGTATCAGTGCGAGCTCTGCAACCGCAATTACAGCTCCCGAGCGTTACTGCTGCGTCATCGTGCCCTTGCGCATACTGATATCAGGAAATATCCCTGCGAAAACTGTCCCAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCAGAGCTCAGCACGTGGGCGCCCGGAGCCACGCCTGCCCCGAGTGCGGGAAGACCTTCGCCACATCTTCAGGGCTGAAGCAGCACACCCACATCCACTCCAGCGTCAAGCCGTTCCAGTGCAAGGTCTGCTTTAAgGCCTACACCCAGTTCTCGAACCTGTGCCGTCACAAGCGAATGCACATCGCCTGCCGAGCCCTGATCGAGTGCCAGAAATGTGGTCAATCCTTCACATCTTACGCTTCACTGACTAAGCATAAGAGATTCTGTGACACGGCTGCTGCAGCCAACGTAAACTTGCGAGGACCTTTGCCTCAAGGACTGCCGCAGATTCCGTCTTTACCAAACGTCGGGATGAATACCCCTAACAATGCTAGCCCTTTCTCGATGTACAGGCCGCCGGGTTTGCCACACCCGTACAATGCCTTTGCTCATCATTACCCAGCTTTACTGACTGCTGCAGCAGCTGCTGCTTGCCAGCCTCCAGATTTCTTGAACCCCTTCCGACTTATCAATGTACAAGGGGCCAATGTCTTCGCAGCATCAATGGAGCACGATATTATGGCGAACGCGAATTTAGTAAAACAACAAGAAGGGCGTATGTCAGTAAAAAGTGTTGATAGCTCAACTTCATTAGATGAGACAAAGAAGAAGGACATTGATTttgaaagtaaaaaagaaaatgaatcgAACGACAGGACTACACCCAAACCTAGAAGTTTGTATGCAAAGTCTCCACCGTCATCAGAAGACTTACACCAACCACGTCCTTTACCAGTTATGCCGATTATGACTCCTATAGTCCCCTTTAACTTTGCAAGGGATGATATAAAGAGAAAGTCACCTTTCAATTTCTCACTCAAACACAACAACAATGACATCCAAGAAGAAAAACCATCCTCACCGATCCCTACGGATTTATCCAAGAATGTAAAAGAAGATGACAAAATGTCAGAATATTCAGATATTGAAGAGGAGCAGAAGAAAGACCAGCCTCTTGATTTGTCTGTATCACGGAAACAGAGTGACAAGGAGTCTGAACCAGAGAATGAGAACCGTTCCTTTCGTAATTCCTCCGTCAAGTCATACTCTCCATCAGAAAGTCCAGTCAACCGTAACAGTAAGACTCCTGAGAATGAGAACGCAGAAGTTGACGTAGAAGCAGTTGAACCGAAACGAGAAGATTCACCTCCGATGAGAGCTGGAGCATATTCAAGACAATATGATTGGACACCAACCCCAATCCTCTCATCACACAACAACAGCCTCATCGATGCTATGTACCGACCAAGGTTTCCGTCCTTTCACTCAGATCAGATTCTGAACTCTTCCCATTCGCCCTACGTCCCGAGCCCGTTTAATTTTTTATCCCCGCTTCTCGGCACGGATGGCCCCGATAGACAACAGTTCGCAAAGTTTCGCGACATGAGCTCTGGTGCTGGAAAATTGCGTGATCGCTACGCTTGCAAATTCTGCGGGAAAGTGTTCCCACGTAGCGCGAATCTTACCCGTCACCTGCGAACCCACACTGGAGAACAGCCTTACAAATGTAAGTACTGCGAGCGTTCGTTCTCGATCTCGTCTAACTTACAGCGACATGTAAGAAACATTCACAATAAGGAGAGACCATTTCGGTGTCCGTTGTGTGACAGGTGCTTCGGACAGCAGACGAACCTCGATCGCCACTTGAAGAAGCACGAGGCGGAGGGTGGAGATTCTCCTAGTTCTGCCGATACTGAGCGGGAAGACGCGTACTTTGATGATATTAGGTCTTTTATGGGGAAAGTGACTTGTTCACCCGGGGCAAGGACTCCGCCGGCGACCTCCCCGCACGCCCCCGCGCATCCTCCGCCGCACCGGCCCTCCGCGCTCGCCATCACCACATAG
Protein Sequence: MMFYLTNSRNISVNPLAAAGSQVSDIASLTASSMTDGQHVSAAPANSSHYSFGARVLGKNGIRGWLDGTTEKSNWLKLVRSTNYPHDVNVQHLLLAGQVWYKVIRDISSGQELLLGPRTPLPLQDVFTNAPERQISTANQAGQQGGEEEEREDAEPRCSFCDAPFPNIEALDRHQIQAHAQPAAAYQCELCNRNYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHIACRALIECQKCGQSFTSYASLTKHKRFCDTAAAANVNLRGPLPQGLPQIPSLPNVGMNTPNNASPFSMYRPPGLPHPYNAFAHHYPALLTAAAAAACQPPDFLNPFRLINVQGANVFAASMEHDIMANANLVKQQEGRMSVKSVDSSTSLDETKKKDIDFESKKENESNDRTTPKPRSLYAKSPPSSEDLHQPRPLPVMPIMTPIVPFNFARDDIKRKSPFNFSLKHNNNDIQEEKPSSPIPTDLSKNVKEDDKMSEYSDIEEEQKKDQPLDLSVSRKQSDKESEPENENRSFRNSSVKSYSPSESPVNRNSKTPENENAEVDVEAVEPKREDSPPMRAGAYSRQYDWTPTPILSSHNNSLIDAMYRPRFPSFHSDQILNSSHSPYVPSPFNFLSPLLGTDGPDRQQFAKFRDMSSGAGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARTPPATSPHAPAHPPPHRPSALAITT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00844632;
90% Identity: iTF_00844632;
80% Identity: -