Scos038823.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scrobipalpa costella
Gene Symbol
-
Assembly
GCA_949820665.1
Location
OX463324.1:1715912-1730019[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.5 1.7e+02 4.2 1.2 1 23 305 327 305 327 0.94
2 16 0.034 3.6 9.4 0.6 1 23 333 355 333 355 0.98
3 16 2.8e-05 0.003 19.2 2.6 1 23 361 383 361 383 0.98
4 16 0.041 4.4 9.2 2.9 1 23 386 408 386 408 0.96
5 16 1.4e-06 0.00015 23.3 0.2 1 23 414 436 414 436 0.97
6 16 2.3e-06 0.00025 22.5 1.8 1 23 442 464 442 464 0.98
7 16 4.6e-05 0.005 18.4 0.9 1 23 470 492 470 492 0.98
8 16 0.0054 0.59 11.9 1.0 1 23 559 581 559 581 0.97
9 16 8.8 9.5e+02 1.8 3.8 1 23 587 609 587 609 0.97
10 16 5e-06 0.00055 21.5 2.7 1 23 615 637 615 637 0.98
11 16 0.00011 0.011 17.3 0.2 2 23 641 662 640 662 0.96
12 16 0.0011 0.12 14.1 2.4 1 23 668 690 668 690 0.97
13 16 3.1e-07 3.3e-05 25.3 4.6 1 23 696 718 696 718 0.99
14 16 1.7e-05 0.0019 19.8 3.3 1 23 724 746 724 746 0.98
15 16 4.9e-05 0.0054 18.4 1.2 1 23 752 775 752 775 0.89
16 16 0.00021 0.023 16.4 3.0 1 23 781 803 781 803 0.98

Sequence Information

Coding Sequence
ATGGACCACGGCTTGGAAAAAGCATTCGGACAATGCCGCTTTTGTCTGAACAATGGTTTCCACAAGAATCTTAAGGAACCCTGCGAAAGAAACGGCGTTCCAAAATTGTACAGCGAATTATTTCTGGATTGCTTTGATTTATTGATATCAACAGACTCCAAGTTACTTAATTTGATCTGCGCATCTTGTATCTGCCGGTTGAGTGATGCGGTGGATTTTAAGACTACGGTTTATGAGTGCCAACAACGGCGGCTCAACAAGCCTGTATTCATTGATGTACCGAATTTGGGATCAGATGTGAATGTCAAGATTGAACCCAAAGAGGAACCTCCTGATTTTGATGAGGCAGTTGATAATGCGAAAGCATATGGGCAATGCTGCTGTTGTTTGAACAACGGTTTTCACAAACACATCACAGAACATTGTGATAGAAATGGGGCTCCGAGATTGTACACCGAACTGTTCCAGGAGTGTTTCAATATATATATATCAACAAACATAGAATTGACTAATTTGATCTGCACATCTTGTATATGCCAGTTGCGTGATGCGATGGAGTTTAAGAGTTTGGTTGTTCAGTCTGAACAACAATTGTTCAGTCGGAATACTGGCGGTGAGGCTATTTACATTGATGttCCAAAATTAGGCTCAGAAATGAGTATCAAAATTGAACCTGAAGAAATCAAAGATGAGCCTCCAGATTACAATGAAGATATTGATGACAATGGTTCTCCGCCTGCTGCCGAGCCGAAATCAAAGaatgatatttttgaaaaatatcaaatagtCACAGAGGTCGCCATTGAAAGGGATAAGCCGAGCACAAGCCATTTCAACAACGCAGACAAATGTTACAGAATGAAATCTATTAAATCTAAAGATAATTTACTAGTTGAACGCGCAAACAGATCATTTGCGTGTAACCAATGCAGGTTCACAACGGGAAAAAGAAATCTCTACAAGTCACACTTAGAAGCGCATTCTTCAGCGACTCAATTCATATGTGACATATGTTTTTACATAACGACCAAAAAGTCAcgaataataaatcatttgagAGTCCATTCGGGTGAAATGCCTTACTCGTGTGTCAAATGCGAGAAAAAGTTCAACAATTTAAGCAATTTTAGAACACACATCAAATTACATGACAGCTTCTTTTGCGATGTGTGCAACCTGAGCTTCACACACAAATACATCTATTCGCGTCACGCGGAAACGCACACGGACGGCAAACCGTTCCCTTGTCAGATATGCGGCAGAAGCTTCAGACGCCGCGCCGGGTTGAACGTGCATCTCAAAGCACACACGGACGAAAAACCTTTCTCTTGCCAGATGTGCGATAAGAAATTCGCGACCAACGCCCATTTGAAGGACCACGTTAGGATACACACAGACGAAAGGCCATTTTCTTGCGGAATGTGCGAGAAGAGGTTTCGGCAGAGATTCTCTTTAGTGGAACACGTTAGAATACACACGGACGAGAAGCCTTACGCTTGCGGGACTTGTGgttcgCCGCCGGCTGACGCGCTAAAATTAAAGAAGATTTTCttagaaaaatatcaatatcacaTTCCTACCATACGAGATAATCCGACCTCTTCAATCGATGGAATCAAATATGGATCAAGCGCGCACGGTGGTAACGATAGACCTTCAGGGAGACAAAAAGAATACTCATGTGCCATTTGCGACTTTACGACGAACAAAAGAAACTCGTATAATTCACATATGCAAGCTCACGAATCGGGTGCCACGTTCATATGCGACTTTTGCTCCTACATTAGCACTAAGAAACAGCGATTGATATGCCATCTCAGGACGCATACAGGCGTAACGCCTTACTCTTGCGATATTTGCCAGAAAACCTTCAACCATATAGGCAATTTGAATAAACATCAGAAATTACACGACACTTTGTACTGTGGGGAGTGTGATATAGTTTTTACGCATAGAGAGGATTTGCTAGACCATATAAAAGCGCATACCGGCGGGAAACCATTCGCTTGTGAGGTCTGCGGGAAAAGATTTGCGCATCGCGGCGCGCACAGAACCCACGTCAGAACGCACACAGGGGAAAAACCTTTCAAATGCGAGACGTGTGACAAGAAATTCTCACACAACAGCACTTTGCGAGACCATATCAGAACGCATACAGGCGAGAAACCGTTTTCTTGCGATTTGTGTGGTAAGAAATTCGCGCATCGACACGCGCTGACTTCTCACGCCAGAATGCATTCAGGGGAAAAGCCTTTTGCTTGCGACACTTGCGATAGAAGGTTTAGTACGCGCAGTAATCTGACGATGCATGACAGAAAGGTGCATAAAGGCGAGAGGCCTTTCGCTTGTCACATTTGCGATAAAAAACTCTCCCGGCATACTGGTTTGGTGCTACATTTGCGTACGCATTCGGTTGATTTGCCTAACACATCAGAATCGCAGCCAAATGATCTCACAGATCCCTTATACGTCCCAACTGAGGACCAAAAAGGTTTATTCCCAAATGGGTCCCCAGCAGAGCCTATATGCGTTCTCACCGAAGATCATAAACCTTTATACGGGAATGGTTGA
Protein Sequence
MDHGLEKAFGQCRFCLNNGFHKNLKEPCERNGVPKLYSELFLDCFDLLISTDSKLLNLICASCICRLSDAVDFKTTVYECQQRRLNKPVFIDVPNLGSDVNVKIEPKEEPPDFDEAVDNAKAYGQCCCCLNNGFHKHITEHCDRNGAPRLYTELFQECFNIYISTNIELTNLICTSCICQLRDAMEFKSLVVQSEQQLFSRNTGGEAIYIDVPKLGSEMSIKIEPEEIKDEPPDYNEDIDDNGSPPAAEPKSKNDIFEKYQIVTEVAIERDKPSTSHFNNADKCYRMKSIKSKDNLLVERANRSFACNQCRFTTGKRNLYKSHLEAHSSATQFICDICFYITTKKSRIINHLRVHSGEMPYSCVKCEKKFNNLSNFRTHIKLHDSFFCDVCNLSFTHKYIYSRHAETHTDGKPFPCQICGRSFRRRAGLNVHLKAHTDEKPFSCQMCDKKFATNAHLKDHVRIHTDERPFSCGMCEKRFRQRFSLVEHVRIHTDEKPYACGTCGSPPADALKLKKIFLEKYQYHIPTIRDNPTSSIDGIKYGSSAHGGNDRPSGRQKEYSCAICDFTTNKRNSYNSHMQAHESGATFICDFCSYISTKKQRLICHLRTHTGVTPYSCDICQKTFNHIGNLNKHQKLHDTLYCGECDIVFTHREDLLDHIKAHTGGKPFACEVCGKRFAHRGAHRTHVRTHTGEKPFKCETCDKKFSHNSTLRDHIRTHTGEKPFSCDLCGKKFAHRHALTSHARMHSGEKPFACDTCDRRFSTRSNLTMHDRKVHKGERPFACHICDKKLSRHTGLVLHLRTHSVDLPNTSESQPNDLTDPLYVPTEDQKGLFPNGSPAEPICVLTEDHKPLYGNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-